Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5827 and GFF5828 overlap by 4 nucleotides GFF5828 and GFF5829 are separated by 12 nucleotides GFF5829 and GFF5830 are separated by 39 nucleotides
GFF5827 - FIG00452956: hypothetical protein, at 2,981 to 4,054
GFF5827
GFF5828 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 4,051 to 4,920
GFF5828
GFF5829 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 4,933 to 6,201
GFF5829
GFF5830 - Aldehyde dehydrogenase (EC 1.2.1.3), at 6,241 to 7,743
GFF5830
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -1
0
1
2 at 4.306 kb on + strand, within GFF5828 at 4.306 kb on + strand, within GFF5828 at 4.307 kb on - strand, within GFF5828 at 4.586 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.835 kb on + strand at 4.835 kb on + strand at 4.869 kb on - strand at 4.910 kb on + strand at 4.934 kb on + strand at 4.935 kb on - strand at 4.935 kb on - strand at 4.935 kb on - strand at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.264 kb on + strand, within GFF5829 at 5.264 kb on + strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.358 kb on - strand, within GFF5829 at 5.390 kb on + strand, within GFF5829 at 5.675 kb on + strand, within GFF5829 at 5.675 kb on + strand, within GFF5829 at 5.676 kb on - strand, within GFF5829 at 5.690 kb on + strand, within GFF5829 at 5.690 kb on + strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.810 kb on + strand, within GFF5829 at 5.811 kb on - strand, within GFF5829 at 5.896 kb on + strand, within GFF5829 at 5.897 kb on - strand, within GFF5829 at 5.897 kb on - strand, within GFF5829 at 5.942 kb on + strand, within GFF5829 at 5.942 kb on + strand, within GFF5829 at 5.942 kb on + strand, within GFF5829 at 5.943 kb on - strand, within GFF5829 at 5.943 kb on - strand, within GFF5829 at 5.943 kb on - strand, within GFF5829 at 5.993 kb on + strand, within GFF5829 at 5.994 kb on - strand, within GFF5829 at 5.994 kb on - strand, within GFF5829
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 4,306 + GFF5828 0.29 +0.3 4,306 + GFF5828 0.29 -0.1 4,307 - GFF5828 0.29 -0.1 4,586 + GFF5828 0.61 +0.1 4,778 + GFF5828 0.84 -0.2 4,778 + GFF5828 0.84 -1.3 4,778 + GFF5828 0.84 +0.3 4,778 + GFF5828 0.84 -0.3 4,835 + +0.0 4,835 + -0.3 4,869 - -0.3 4,910 + +0.4 4,934 + -0.6 4,935 - -0.1 4,935 - +0.1 4,935 - +0.3 5,090 + GFF5829 0.12 +0.4 5,090 + GFF5829 0.12 -0.1 5,090 + GFF5829 0.12 -1.2 5,090 + GFF5829 0.12 -0.8 5,090 + GFF5829 0.12 +0.4 5,091 - GFF5829 0.12 +0.3 5,091 - GFF5829 0.12 +0.5 5,091 - GFF5829 0.12 -0.4 5,220 - GFF5829 0.23 +0.0 5,220 - GFF5829 0.23 -0.4 5,220 - GFF5829 0.23 +0.4 5,264 + GFF5829 0.26 +0.2 5,264 + GFF5829 0.26 +0.6 5,265 - GFF5829 0.26 -0.8 5,265 - GFF5829 0.26 +0.6 5,265 - GFF5829 0.26 -0.7 5,265 - GFF5829 0.26 -0.7 5,358 - GFF5829 0.33 -0.8 5,390 + GFF5829 0.36 -0.3 5,675 + GFF5829 0.58 +0.1 5,675 + GFF5829 0.58 +1.1 5,676 - GFF5829 0.59 -0.6 5,690 + GFF5829 0.60 +2.1 5,690 + GFF5829 0.60 -0.3 5,691 - GFF5829 0.60 -0.3 5,691 - GFF5829 0.60 -0.3 5,691 - GFF5829 0.60 -1.3 5,691 - GFF5829 0.60 -0.3 5,691 - GFF5829 0.60 +1.1 5,741 + GFF5829 0.64 +0.2 5,741 + GFF5829 0.64 -0.5 5,741 + GFF5829 0.64 +0.5 5,742 - GFF5829 0.64 +0.3 5,742 - GFF5829 0.64 +2.2 5,742 - GFF5829 0.64 -0.1 5,742 - GFF5829 0.64 -0.4 5,810 + GFF5829 0.69 +0.2 5,811 - GFF5829 0.69 +0.8 5,896 + GFF5829 0.76 +1.4 5,897 - GFF5829 0.76 +1.9 5,897 - GFF5829 0.76 -0.5 5,942 + GFF5829 0.80 -0.0 5,942 + GFF5829 0.80 -0.3 5,942 + GFF5829 0.80 -0.0 5,943 - GFF5829 0.80 +1.2 5,943 - GFF5829 0.80 -0.3 5,943 - GFF5829 0.80 +0.8 5,993 + GFF5829 0.84 -1.3 5,994 - GFF5829 0.84 +0.4 5,994 - GFF5829 0.84 +0.3
Or see this region's nucleotide sequence