Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5804 and GFF5805 are separated by 27 nucleotides GFF5805 and GFF5806 overlap by 14 nucleotides GFF5806 and GFF5807 are separated by 157 nucleotides
GFF5804 - FIG00978734: hypothetical protein, at 179,751 to 181,004
GFF5804
GFF5805 - Putative transmembrane protein, at 181,032 to 181,718
GFF5805
GFF5806 - RNA polymerase ECF-type sigma factor, at 181,705 to 182,280
GFF5806
GFF5807 - hypothetical protein, at 182,438 to 183,685
GFF5807
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1 at 181.033 kb on + strand at 181.162 kb on + strand, within GFF5805 at 181.162 kb on + strand, within GFF5805 at 181.162 kb on + strand, within GFF5805 at 181.258 kb on + strand, within GFF5805 at 181.291 kb on + strand, within GFF5805 at 181.291 kb on + strand, within GFF5805 at 181.291 kb on + strand, within GFF5805 at 181.292 kb on - strand, within GFF5805 at 181.292 kb on - strand, within GFF5805 at 181.889 kb on + strand, within GFF5806 at 181.890 kb on - strand, within GFF5806 at 182.066 kb on + strand, within GFF5806 at 182.067 kb on - strand, within GFF5806 at 182.150 kb on + strand, within GFF5806 at 182.150 kb on + strand, within GFF5806 at 182.150 kb on + strand, within GFF5806 at 182.151 kb on - strand, within GFF5806 at 182.151 kb on - strand, within GFF5806 at 182.320 kb on + strand at 182.352 kb on - strand at 182.352 kb on - strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.906 kb on + strand, within GFF5807 at 182.907 kb on - strand, within GFF5807 at 183.039 kb on - strand, within GFF5807
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 181,033 + +0.3 181,162 + GFF5805 0.19 -0.4 181,162 + GFF5805 0.19 -1.0 181,162 + GFF5805 0.19 -1.1 181,258 + GFF5805 0.33 +0.1 181,291 + GFF5805 0.38 +0.6 181,291 + GFF5805 0.38 +0.6 181,291 + GFF5805 0.38 -0.1 181,292 - GFF5805 0.38 -0.5 181,292 - GFF5805 0.38 -0.4 181,889 + GFF5806 0.32 -0.8 181,890 - GFF5806 0.32 -0.7 182,066 + GFF5806 0.63 -0.3 182,067 - GFF5806 0.63 -0.3 182,150 + GFF5806 0.77 -0.5 182,150 + GFF5806 0.77 +0.0 182,150 + GFF5806 0.77 -1.5 182,151 - GFF5806 0.77 -0.1 182,151 - GFF5806 0.77 +0.1 182,320 + -0.4 182,352 - -0.7 182,352 - +0.4 182,531 + +0.4 182,531 + -0.0 182,531 + -0.0 182,531 + +0.8 182,532 - +0.1 182,532 - +1.6 182,532 - +0.1 182,532 - +0.2 182,532 - -0.1 182,532 - -0.7 182,532 - +0.4 182,906 + GFF5807 0.38 +1.1 182,907 - GFF5807 0.38 +0.0 183,039 - GFF5807 0.48 -0.3
Or see this region's nucleotide sequence