Strain Fitness in Variovorax sp. SCN45 around GFF5795

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5794 and GFF5795 are separated by 404 nucleotidesGFF5795 and GFF5796 are separated by 70 nucleotidesGFF5796 and GFF5797 are separated by 23 nucleotides GFF5794 - Polyphosphate kinase 2 (EC 2.7.4.1), at 169,723 to 170,649 GFF5794 GFF5795 - esterase, PHB depolymerase family, at 171,054 to 172,097 GFF5795 GFF5796 - no description, at 172,168 to 172,863 GFF5796 GFF5797 - no description, at 172,887 to 173,090 GFF5797 Position (kb) 171 172 173Strain fitness (log2 ratio) -2 -1 0 1 2at 170.104 kb on + strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.116 kb on + strand, within GFF5794at 170.116 kb on + strand, within GFF5794at 170.117 kb on - strand, within GFF5794at 170.293 kb on + strand, within GFF5794at 170.293 kb on + strand, within GFF5794at 170.294 kb on - strand, within GFF5794at 170.411 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.414 kb on - strand, within GFF5794at 170.414 kb on - strand, within GFF5794at 170.414 kb on - strand, within GFF5794at 170.599 kb on + strandat 170.600 kb on - strandat 170.644 kb on + strandat 170.644 kb on + strandat 170.644 kb on + strandat 170.645 kb on - strandat 170.645 kb on - strandat 170.645 kb on - strandat 170.648 kb on - strandat 170.663 kb on + strandat 170.913 kb on - strandat 171.027 kb on + strandat 171.027 kb on + strandat 171.028 kb on - strandat 171.028 kb on - strandat 171.093 kb on + strandat 171.253 kb on - strand, within GFF5795at 171.453 kb on + strand, within GFF5795at 171.454 kb on - strand, within GFF5795at 171.528 kb on + strand, within GFF5795at 171.528 kb on + strand, within GFF5795at 172.159 kb on + strandat 172.169 kb on + strandat 172.169 kb on + strandat 172.169 kb on + strandat 172.169 kb on + strandat 172.169 kb on + strandat 172.169 kb on + strandat 172.170 kb on - strandat 172.170 kb on - strandat 172.170 kb on - strandat 172.173 kb on + strandat 172.173 kb on + strandat 172.174 kb on - strandat 172.174 kb on - strandat 172.174 kb on - strandat 172.179 kb on + strandat 172.180 kb on - strandat 172.275 kb on + strand, within GFF5796at 172.345 kb on + strand, within GFF5796at 172.345 kb on + strand, within GFF5796at 172.367 kb on + strand, within GFF5796at 172.368 kb on - strand, within GFF5796at 172.368 kb on - strand, within GFF5796at 172.368 kb on - strand, within GFF5796at 172.368 kb on - strand, within GFF5796at 172.393 kb on - strand, within GFF5796at 172.393 kb on - strand, within GFF5796at 172.419 kb on - strand, within GFF5796at 172.419 kb on - strand, within GFF5796at 172.510 kb on + strand, within GFF5796at 172.511 kb on - strand, within GFF5796at 172.556 kb on + strand, within GFF5796at 172.556 kb on + strand, within GFF5796at 172.556 kb on + strand, within GFF5796at 172.557 kb on - strand, within GFF5796at 172.557 kb on - strand, within GFF5796at 172.557 kb on - strand, within GFF5796at 172.557 kb on - strand, within GFF5796at 172.557 kb on - strand, within GFF5796at 172.560 kb on + strand, within GFF5796at 172.560 kb on + strand, within GFF5796at 172.560 kb on + strand, within GFF5796at 172.561 kb on - strand, within GFF5796at 172.561 kb on - strand, within GFF5796at 172.562 kb on + strand, within GFF5796at 172.588 kb on + strand, within GFF5796at 172.590 kb on + strand, within GFF5796at 172.590 kb on + strand, within GFF5796at 172.590 kb on + strand, within GFF5796at 172.590 kb on + strand, within GFF5796at 172.590 kb on + strand, within GFF5796at 172.617 kb on + strand, within GFF5796at 172.617 kb on + strand, within GFF5796at 172.618 kb on - strand, within GFF5796at 172.618 kb on - strand, within GFF5796at 172.618 kb on - strand, within GFF5796at 172.618 kb on - strand, within GFF5796at 172.618 kb on - strand, within GFF5796at 172.618 kb on - strand, within GFF5796at 172.634 kb on + strand, within GFF5796at 172.635 kb on - strand, within GFF5796at 172.635 kb on - strand, within GFF5796at 172.635 kb on - strand, within GFF5796at 172.635 kb on - strand, within GFF5796at 172.686 kb on + strand, within GFF5796at 172.687 kb on - strand, within GFF5796at 172.775 kb on + strand, within GFF5796at 172.775 kb on + strand, within GFF5796at 172.775 kb on + strand, within GFF5796at 172.776 kb on - strand, within GFF5796at 172.776 kb on - strand, within GFF5796at 172.916 kb on - strand, within GFF5797at 172.922 kb on + strand, within GFF5797at 172.923 kb on - strand, within GFF5797at 172.923 kb on - strand, within GFF5797at 172.997 kb on + strand, within GFF5797at 172.998 kb on - strand, within GFF5797at 173.031 kb on + strand, within GFF5797at 173.032 kb on - strand, within GFF5797at 173.061 kb on + strand, within GFF5797

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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170,104 + GFF5794 0.41 +0.8
170,105 - GFF5794 0.41 +0.5
170,105 - GFF5794 0.41 -1.5
170,105 - GFF5794 0.41 +0.6
170,105 - GFF5794 0.41 +0.1
170,116 + GFF5794 0.42 -1.0
170,116 + GFF5794 0.42 -0.4
170,117 - GFF5794 0.43 -0.2
170,293 + GFF5794 0.61 -0.3
170,293 + GFF5794 0.61 -0.5
170,294 - GFF5794 0.62 -0.6
170,411 + GFF5794 0.74 -0.9
170,413 + GFF5794 0.74 +0.6
170,413 + GFF5794 0.74 -0.3
170,413 + GFF5794 0.74 -2.2
170,413 + GFF5794 0.74 +0.1
170,413 + GFF5794 0.74 +0.8
170,414 - GFF5794 0.75 +0.2
170,414 - GFF5794 0.75 -0.9
170,414 - GFF5794 0.75 -0.3
170,599 + -0.1
170,600 - +0.2
170,644 + -0.4
170,644 + -0.6
170,644 + +0.7
170,645 - -0.4
170,645 - +0.2
170,645 - -1.3
170,648 - +0.2
170,663 + +0.7
170,913 - +1.6
171,027 + -0.4
171,027 + -0.1
171,028 - -0.9
171,028 - +0.5
171,093 + -0.1
171,253 - GFF5795 0.19 -0.4
171,453 + GFF5795 0.38 -1.3
171,454 - GFF5795 0.38 -0.3
171,528 + GFF5795 0.45 +0.2
171,528 + GFF5795 0.45 -0.5
172,159 + +0.1
172,169 + +0.2
172,169 + -1.5
172,169 + +0.2
172,169 + -1.9
172,169 + +0.1
172,169 + -0.4
172,170 - +0.2
172,170 - +0.1
172,170 - -0.0
172,173 + +0.2
172,173 + +0.8
172,174 - -0.4
172,174 - +0.2
172,174 - -2.0
172,179 + -0.5
172,180 - -0.1
172,275 + GFF5796 0.15 -0.3
172,345 + GFF5796 0.25 +0.3
172,345 + GFF5796 0.25 -0.6
172,367 + GFF5796 0.29 -0.9
172,368 - GFF5796 0.29 -0.3
172,368 - GFF5796 0.29 -0.7
172,368 - GFF5796 0.29 -0.4
172,368 - GFF5796 0.29 -0.5
172,393 - GFF5796 0.32 +0.3
172,393 - GFF5796 0.32 +0.4
172,419 - GFF5796 0.36 +1.1
172,419 - GFF5796 0.36 -0.3
172,510 + GFF5796 0.49 -0.7
172,511 - GFF5796 0.49 -0.7
172,556 + GFF5796 0.56 +0.9
172,556 + GFF5796 0.56 +0.4
172,556 + GFF5796 0.56 +0.3
172,557 - GFF5796 0.56 +0.8
172,557 - GFF5796 0.56 -0.4
172,557 - GFF5796 0.56 -0.2
172,557 - GFF5796 0.56 +0.3
172,557 - GFF5796 0.56 -0.5
172,560 + GFF5796 0.56 +2.2
172,560 + GFF5796 0.56 +1.4
172,560 + GFF5796 0.56 +0.1
172,561 - GFF5796 0.56 -0.3
172,561 - GFF5796 0.56 +0.6
172,562 + GFF5796 0.57 -0.2
172,588 + GFF5796 0.60 -0.3
172,590 + GFF5796 0.61 -0.7
172,590 + GFF5796 0.61 -0.3
172,590 + GFF5796 0.61 -0.2
172,590 + GFF5796 0.61 +0.4
172,590 + GFF5796 0.61 -0.2
172,617 + GFF5796 0.65 +1.3
172,617 + GFF5796 0.65 -0.1
172,618 - GFF5796 0.65 -0.9
172,618 - GFF5796 0.65 -0.0
172,618 - GFF5796 0.65 -0.2
172,618 - GFF5796 0.65 +0.8
172,618 - GFF5796 0.65 +0.4
172,618 - GFF5796 0.65 -0.5
172,634 + GFF5796 0.67 -0.2
172,635 - GFF5796 0.67 +0.6
172,635 - GFF5796 0.67 +0.4
172,635 - GFF5796 0.67 -0.4
172,635 - GFF5796 0.67 -0.7
172,686 + GFF5796 0.74 -0.4
172,687 - GFF5796 0.75 +0.5
172,775 + GFF5796 0.87 +1.2
172,775 + GFF5796 0.87 -0.2
172,775 + GFF5796 0.87 +0.2
172,776 - GFF5796 0.87 +1.3
172,776 - GFF5796 0.87 -0.2
172,916 - GFF5797 0.14 -0.4
172,922 + GFF5797 0.17 -0.6
172,923 - GFF5797 0.18 +0.1
172,923 - GFF5797 0.18 -0.3
172,997 + GFF5797 0.54 -0.1
172,998 - GFF5797 0.54 +0.2
173,031 + GFF5797 0.71 +0.2
173,032 - GFF5797 0.71 +0.1
173,061 + GFF5797 0.85 -0.3

Or see this region's nucleotide sequence