Strain Fitness in Variovorax sp. SCN45 around GFF5270

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5269 and GFF5270 are separated by 37 nucleotidesGFF5270 and GFF5271 are separated by 93 nucleotides GFF5269 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 136,901 to 137,950 GFF5269 GFF5270 - BUG/TctC family periplasmic protein, at 137,988 to 138,971 GFF5270 GFF5271 - Transcriptional regulator, LysR family, at 139,065 to 139,994 GFF5271 Position (kb) 137 138 139Strain fitness (log2 ratio) -1 0 1at 137.115 kb on + strand, within GFF5269at 137.115 kb on + strand, within GFF5269at 137.115 kb on + strand, within GFF5269at 137.116 kb on - strand, within GFF5269at 137.116 kb on - strand, within GFF5269at 137.116 kb on - strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.240 kb on + strand, within GFF5269at 137.241 kb on - strand, within GFF5269at 137.241 kb on - strand, within GFF5269at 137.241 kb on - strand, within GFF5269at 137.241 kb on - strand, within GFF5269at 137.493 kb on + strand, within GFF5269at 137.493 kb on + strand, within GFF5269at 137.494 kb on - strand, within GFF5269at 138.028 kb on + strandat 138.028 kb on + strandat 138.029 kb on - strandat 138.029 kb on - strandat 138.196 kb on + strand, within GFF5270at 138.196 kb on + strand, within GFF5270at 138.196 kb on + strand, within GFF5270at 138.197 kb on - strand, within GFF5270at 138.197 kb on - strand, within GFF5270at 138.197 kb on - strand, within GFF5270at 138.205 kb on + strand, within GFF5270at 138.206 kb on - strand, within GFF5270at 138.409 kb on + strand, within GFF5270at 138.409 kb on + strand, within GFF5270at 138.409 kb on + strand, within GFF5270at 138.409 kb on + strand, within GFF5270at 138.409 kb on + strand, within GFF5270at 138.496 kb on + strand, within GFF5270at 138.496 kb on + strand, within GFF5270at 138.496 kb on + strand, within GFF5270at 138.496 kb on + strand, within GFF5270at 138.496 kb on + strand, within GFF5270at 138.497 kb on - strand, within GFF5270at 138.497 kb on - strand, within GFF5270at 138.497 kb on - strand, within GFF5270at 138.497 kb on - strand, within GFF5270at 138.553 kb on + strand, within GFF5270at 138.553 kb on + strand, within GFF5270at 138.553 kb on + strand, within GFF5270at 138.553 kb on + strand, within GFF5270at 138.554 kb on - strand, within GFF5270at 138.554 kb on - strand, within GFF5270at 138.634 kb on + strand, within GFF5270at 138.634 kb on + strand, within GFF5270at 138.634 kb on + strand, within GFF5270at 138.635 kb on - strand, within GFF5270at 138.635 kb on - strand, within GFF5270at 138.635 kb on - strand, within GFF5270at 138.635 kb on - strand, within GFF5270at 138.635 kb on - strand, within GFF5270at 138.880 kb on + strandat 138.991 kb on + strandat 138.992 kb on - strandat 139.053 kb on - strandat 139.053 kb on - strandat 139.053 kb on - strandat 139.053 kb on - strandat 139.055 kb on - strandat 139.105 kb on + strandat 139.105 kb on + strandat 139.106 kb on - strandat 139.106 kb on - strandat 139.281 kb on + strand, within GFF5271at 139.281 kb on + strand, within GFF5271at 139.282 kb on - strand, within GFF5271at 139.282 kb on - strand, within GFF5271at 139.440 kb on + strand, within GFF5271at 139.440 kb on + strand, within GFF5271at 139.440 kb on + strand, within GFF5271at 139.440 kb on + strand, within GFF5271at 139.441 kb on - strand, within GFF5271at 139.441 kb on - strand, within GFF5271at 139.573 kb on - strand, within GFF5271at 139.573 kb on - strand, within GFF5271at 139.854 kb on + strand, within GFF5271at 139.854 kb on + strand, within GFF5271at 139.855 kb on - strand, within GFF5271

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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137,115 + GFF5269 0.20 -0.2
137,115 + GFF5269 0.20 +0.6
137,115 + GFF5269 0.20 -0.3
137,116 - GFF5269 0.20 -0.1
137,116 - GFF5269 0.20 -0.1
137,116 - GFF5269 0.20 +0.6
137,240 + GFF5269 0.32 -0.3
137,240 + GFF5269 0.32 +0.3
137,240 + GFF5269 0.32 -0.0
137,240 + GFF5269 0.32 +0.8
137,240 + GFF5269 0.32 -0.2
137,240 + GFF5269 0.32 -0.7
137,240 + GFF5269 0.32 +0.6
137,241 - GFF5269 0.32 -1.4
137,241 - GFF5269 0.32 +0.0
137,241 - GFF5269 0.32 -0.2
137,241 - GFF5269 0.32 +0.8
137,493 + GFF5269 0.56 +0.3
137,493 + GFF5269 0.56 +0.3
137,494 - GFF5269 0.56 -0.3
138,028 + +0.3
138,028 + +0.6
138,029 - -0.1
138,029 - -0.7
138,196 + GFF5270 0.21 +0.5
138,196 + GFF5270 0.21 +0.3
138,196 + GFF5270 0.21 +0.3
138,197 - GFF5270 0.21 +0.4
138,197 - GFF5270 0.21 +0.0
138,197 - GFF5270 0.21 -0.1
138,205 + GFF5270 0.22 +0.5
138,206 - GFF5270 0.22 +0.1
138,409 + GFF5270 0.43 -0.3
138,409 + GFF5270 0.43 +0.1
138,409 + GFF5270 0.43 +0.6
138,409 + GFF5270 0.43 -0.1
138,409 + GFF5270 0.43 -0.6
138,496 + GFF5270 0.52 -0.8
138,496 + GFF5270 0.52 -0.7
138,496 + GFF5270 0.52 +0.5
138,496 + GFF5270 0.52 -0.8
138,496 + GFF5270 0.52 +0.1
138,497 - GFF5270 0.52 +1.3
138,497 - GFF5270 0.52 +0.4
138,497 - GFF5270 0.52 +0.5
138,497 - GFF5270 0.52 -0.2
138,553 + GFF5270 0.57 -0.5
138,553 + GFF5270 0.57 -0.6
138,553 + GFF5270 0.57 -0.3
138,553 + GFF5270 0.57 -0.4
138,554 - GFF5270 0.58 -0.3
138,554 - GFF5270 0.58 -0.3
138,634 + GFF5270 0.66 -0.1
138,634 + GFF5270 0.66 -0.0
138,634 + GFF5270 0.66 +0.8
138,635 - GFF5270 0.66 +0.8
138,635 - GFF5270 0.66 -0.1
138,635 - GFF5270 0.66 +0.6
138,635 - GFF5270 0.66 -0.1
138,635 - GFF5270 0.66 -0.6
138,880 + -0.1
138,991 + -0.2
138,992 - +0.1
139,053 - +0.0
139,053 - -1.2
139,053 - -0.9
139,053 - +0.6
139,055 - -0.2
139,105 + +0.5
139,105 + +0.3
139,106 - -0.5
139,106 - -0.5
139,281 + GFF5271 0.23 -0.6
139,281 + GFF5271 0.23 -0.8
139,282 - GFF5271 0.23 +0.2
139,282 - GFF5271 0.23 -0.6
139,440 + GFF5271 0.40 +0.2
139,440 + GFF5271 0.40 +0.4
139,440 + GFF5271 0.40 +0.6
139,440 + GFF5271 0.40 +0.0
139,441 - GFF5271 0.40 -0.7
139,441 - GFF5271 0.40 -0.5
139,573 - GFF5271 0.55 -0.4
139,573 - GFF5271 0.55 -0.3
139,854 + GFF5271 0.85 -1.4
139,854 + GFF5271 0.85 -1.0
139,855 - GFF5271 0.85 -0.0

Or see this region's nucleotide sequence