Strain Fitness in Variovorax sp. SCN45 around GFF5189

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5188 and GFF5189 are separated by 85 nucleotidesGFF5189 and GFF5190 are separated by 140 nucleotides GFF5188 - no description, at 46,063 to 47,025 GFF5188 GFF5189 - L-arabinolactonase (EC 3.1.1.15), at 47,111 to 48,064 GFF5189 GFF5190 - L-arabinose 1-dehydrogenase (EC 1.1.1.376), at 48,205 to 48,978 GFF5190 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.163 kb on + strand, within GFF5188at 46.832 kb on + strand, within GFF5188at 46.833 kb on - strand, within GFF5188at 47.052 kb on + strandat 47.053 kb on - strandat 47.053 kb on - strandat 47.056 kb on + strandat 47.056 kb on + strandat 47.056 kb on + strandat 47.056 kb on + strandat 47.057 kb on - strandat 47.057 kb on - strandat 47.057 kb on - strandat 47.057 kb on - strandat 47.057 kb on - strandat 47.057 kb on - strandat 47.057 kb on - strandat 47.135 kb on + strandat 47.135 kb on + strandat 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.288 kb on + strand, within GFF5189at 47.289 kb on - strand, within GFF5189at 47.289 kb on - strand, within GFF5189at 47.476 kb on - strand, within GFF5189at 47.481 kb on + strand, within GFF5189at 47.481 kb on + strand, within GFF5189at 47.481 kb on + strand, within GFF5189at 47.511 kb on + strand, within GFF5189at 47.511 kb on + strand, within GFF5189at 47.511 kb on + strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.605 kb on - strand, within GFF5189at 47.605 kb on - strand, within GFF5189at 47.728 kb on - strand, within GFF5189at 47.919 kb on + strand, within GFF5189at 47.919 kb on + strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 48.112 kb on + strandat 48.112 kb on + strandat 48.112 kb on + strandat 48.112 kb on + strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.128 kb on + strandat 48.547 kb on + strand, within GFF5190at 48.547 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.686 kb on - strand, within GFF5190at 48.694 kb on + strand, within GFF5190at 48.695 kb on - strand, within GFF5190at 48.695 kb on - strand, within GFF5190at 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.985 kb on - strandat 48.985 kb on - strandat 48.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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46,163 + GFF5188 0.10 +2.6
46,832 + GFF5188 0.80 -1.0
46,833 - GFF5188 0.80 -0.2
47,052 + +0.4
47,053 - +0.2
47,053 - +0.4
47,056 + +0.2
47,056 + +0.2
47,056 + -0.5
47,056 + -0.4
47,057 - -1.0
47,057 - -0.3
47,057 - -0.4
47,057 - +0.5
47,057 - +0.3
47,057 - +1.0
47,057 - +0.2
47,135 + -0.1
47,135 + +2.1
47,232 + GFF5189 0.13 +0.5
47,232 + GFF5189 0.13 -0.3
47,232 + GFF5189 0.13 +0.1
47,232 + GFF5189 0.13 +0.0
47,232 + GFF5189 0.13 +0.1
47,233 - GFF5189 0.13 -0.4
47,233 - GFF5189 0.13 +0.9
47,233 - GFF5189 0.13 +0.5
47,233 - GFF5189 0.13 +0.3
47,233 - GFF5189 0.13 +0.6
47,288 + GFF5189 0.19 +0.1
47,289 - GFF5189 0.19 +0.3
47,289 - GFF5189 0.19 +0.3
47,476 - GFF5189 0.38 +0.6
47,481 + GFF5189 0.39 +1.0
47,481 + GFF5189 0.39 +0.3
47,481 + GFF5189 0.39 -1.0
47,511 + GFF5189 0.42 +0.5
47,511 + GFF5189 0.42 +0.5
47,511 + GFF5189 0.42 -0.4
47,512 - GFF5189 0.42 +0.6
47,512 - GFF5189 0.42 +0.4
47,512 - GFF5189 0.42 +1.9
47,512 - GFF5189 0.42 +0.0
47,512 - GFF5189 0.42 +0.3
47,512 - GFF5189 0.42 +0.9
47,605 - GFF5189 0.52 -0.1
47,605 - GFF5189 0.52 -0.1
47,728 - GFF5189 0.65 +0.6
47,919 + GFF5189 0.85 -0.5
47,919 + GFF5189 0.85 -0.6
47,920 - GFF5189 0.85 +0.1
47,920 - GFF5189 0.85 -0.6
47,920 - GFF5189 0.85 -0.1
47,920 - GFF5189 0.85 +0.5
47,920 - GFF5189 0.85 -0.3
48,112 + +0.3
48,112 + -0.6
48,112 + -1.7
48,112 + -0.6
48,113 - +0.3
48,113 - -0.5
48,113 - -0.4
48,113 - -0.5
48,128 + +0.3
48,547 + GFF5190 0.44 -1.2
48,547 + GFF5190 0.44 -1.3
48,550 + GFF5190 0.45 -0.3
48,550 + GFF5190 0.45 -0.4
48,550 + GFF5190 0.45 +0.5
48,550 + GFF5190 0.45 -1.9
48,550 + GFF5190 0.45 +0.0
48,551 - GFF5190 0.45 -0.2
48,551 - GFF5190 0.45 -0.3
48,551 - GFF5190 0.45 -0.2
48,551 - GFF5190 0.45 -0.3
48,551 - GFF5190 0.45 -0.3
48,686 - GFF5190 0.62 -0.5
48,694 + GFF5190 0.63 +1.3
48,695 - GFF5190 0.63 -0.2
48,695 - GFF5190 0.63 +0.6
48,976 + +1.1
48,976 + -0.5
48,976 + -0.2
48,976 + -0.9
48,976 + -0.8
48,976 + +0.1
48,977 - -0.4
48,977 - -0.7
48,977 - -0.1
48,977 - +0.4
48,977 - +0.8
48,985 - -0.5
48,985 - -1.0
48,985 - +0.2

Or see this region's nucleotide sequence