Strain Fitness in Variovorax sp. SCN45 around GFF493

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF492 and GFF493 are separated by 272 nucleotidesGFF493 and GFF494 overlap by 4 nucleotides GFF492 - no description, at 532,511 to 533,476 GFF492 GFF493 - RND efflux system, inner membrane transporter, at 533,749 to 536,907 GFF493 GFF494 - RND efflux system, membrane fusion protein, at 536,904 to 538,115 GFF494 Position (kb) 533 534 535 536 537Strain fitness (log2 ratio) -2 -1 0 1 2at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.474 kb on + strandat 533.475 kb on - strandat 533.475 kb on - strandat 533.475 kb on - strandat 533.525 kb on + strandat 533.526 kb on - strandat 533.526 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.545 kb on + strandat 533.545 kb on + strandat 533.545 kb on + strandat 533.545 kb on + strandat 533.545 kb on + strandat 533.545 kb on + strandat 533.545 kb on + strandat 533.546 kb on - strandat 533.546 kb on - strandat 533.546 kb on - strandat 533.546 kb on - strandat 533.546 kb on - strandat 533.546 kb on - strandat 533.546 kb on - strandat 533.546 kb on - strandat 533.750 kb on + strandat 533.757 kb on + strandat 533.804 kb on + strandat 533.804 kb on + strandat 533.804 kb on + strandat 533.805 kb on - strandat 533.805 kb on - strandat 533.805 kb on - strandat 534.419 kb on + strand, within GFF493at 534.419 kb on + strand, within GFF493at 534.420 kb on - strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.518 kb on + strand, within GFF493at 534.519 kb on - strand, within GFF493at 534.519 kb on - strand, within GFF493at 534.519 kb on - strand, within GFF493at 534.519 kb on - strand, within GFF493at 534.519 kb on - strand, within GFF493at 534.519 kb on - strand, within GFF493at 535.016 kb on + strand, within GFF493at 535.016 kb on + strand, within GFF493at 535.016 kb on + strand, within GFF493at 535.017 kb on - strand, within GFF493at 535.017 kb on - strand, within GFF493at 535.056 kb on + strand, within GFF493at 535.056 kb on + strand, within GFF493at 535.056 kb on + strand, within GFF493at 535.056 kb on + strand, within GFF493at 535.057 kb on - strand, within GFF493at 535.215 kb on + strand, within GFF493at 535.301 kb on + strand, within GFF493at 535.301 kb on + strand, within GFF493at 535.301 kb on + strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.302 kb on - strand, within GFF493at 535.391 kb on + strand, within GFF493at 535.391 kb on + strand, within GFF493at 535.391 kb on + strand, within GFF493at 535.392 kb on - strand, within GFF493at 535.392 kb on - strand, within GFF493at 535.392 kb on - strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.454 kb on + strand, within GFF493at 535.455 kb on - strand, within GFF493at 535.455 kb on - strand, within GFF493at 535.455 kb on - strand, within GFF493at 535.455 kb on - strand, within GFF493at 535.455 kb on - strand, within GFF493at 535.455 kb on - strand, within GFF493at 535.553 kb on + strand, within GFF493at 535.553 kb on + strand, within GFF493at 535.553 kb on + strand, within GFF493at 535.553 kb on + strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.554 kb on - strand, within GFF493at 535.578 kb on - strand, within GFF493at 535.578 kb on - strand, within GFF493at 535.669 kb on + strand, within GFF493at 535.669 kb on + strand, within GFF493at 535.670 kb on - strand, within GFF493at 535.694 kb on + strand, within GFF493at 535.694 kb on + strand, within GFF493at 535.694 kb on + strand, within GFF493at 535.694 kb on + strand, within GFF493at 535.694 kb on + strand, within GFF493at 535.695 kb on - strand, within GFF493at 535.695 kb on - strand, within GFF493at 535.695 kb on - strand, within GFF493at 535.695 kb on - strand, within GFF493at 535.772 kb on + strand, within GFF493at 535.773 kb on - strand, within GFF493at 535.773 kb on - strand, within GFF493at 536.069 kb on + strand, within GFF493at 536.069 kb on + strand, within GFF493at 536.070 kb on - strand, within GFF493at 536.070 kb on - strand, within GFF493at 536.070 kb on - strand, within GFF493at 536.309 kb on + strand, within GFF493at 536.309 kb on + strand, within GFF493at 536.309 kb on + strand, within GFF493at 536.310 kb on - strand, within GFF493at 536.310 kb on - strand, within GFF493at 536.310 kb on - strand, within GFF493at 536.411 kb on + strand, within GFF493at 536.411 kb on + strand, within GFF493at 536.411 kb on + strand, within GFF493at 536.412 kb on - strand, within GFF493at 536.438 kb on + strand, within GFF493at 536.439 kb on - strand, within GFF493at 536.439 kb on - strand, within GFF493at 536.450 kb on + strand, within GFF493at 536.450 kb on + strand, within GFF493at 536.450 kb on + strand, within GFF493at 536.451 kb on - strand, within GFF493at 536.451 kb on - strand, within GFF493at 536.451 kb on - strand, within GFF493at 536.540 kb on + strand, within GFF493at 536.540 kb on + strand, within GFF493at 536.541 kb on - strand, within GFF493at 536.541 kb on - strand, within GFF493at 536.618 kb on + strandat 536.618 kb on + strandat 536.618 kb on + strandat 536.618 kb on + strandat 536.619 kb on - strandat 536.619 kb on - strandat 536.619 kb on - strandat 536.619 kb on - strandat 536.640 kb on - strandat 536.717 kb on + strandat 536.717 kb on + strandat 536.717 kb on + strandat 536.717 kb on + strandat 536.718 kb on - strandat 536.718 kb on - strandat 536.718 kb on - strandat 536.780 kb on + strandat 536.780 kb on + strandat 536.780 kb on + strandat 536.781 kb on - strandat 536.819 kb on + strandat 536.820 kb on - strandat 536.820 kb on - strandat 536.820 kb on - strandat 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.032 kb on - strand, within GFF494at 537.032 kb on - strand, within GFF494at 537.032 kb on - strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.753 kb on + strand, within GFF494at 537.753 kb on + strand, within GFF494at 537.754 kb on - strand, within GFF494at 537.815 kb on - strand, within GFF494at 537.815 kb on - strand, within GFF494

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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533,105 + GFF492 0.61 +1.0
533,105 + GFF492 0.61 -2.6
533,105 + GFF492 0.61 +0.1
533,105 + GFF492 0.61 -1.5
533,105 + GFF492 0.61 +0.2
533,105 + GFF492 0.61 +0.1
533,105 + GFF492 0.61 -0.9
533,106 - GFF492 0.62 -0.4
533,106 - GFF492 0.62 -0.4
533,106 - GFF492 0.62 -1.2
533,106 - GFF492 0.62 -0.3
533,106 - GFF492 0.62 -0.2
533,106 - GFF492 0.62 -0.4
533,106 - GFF492 0.62 -0.5
533,106 - GFF492 0.62 +1.0
533,106 - GFF492 0.62 -1.9
533,106 - GFF492 0.62 +0.3
533,106 - GFF492 0.62 -0.1
533,474 + +0.5
533,475 - -0.1
533,475 - -1.0
533,475 - +0.6
533,525 + +0.2
533,526 - -0.8
533,526 - -0.6
533,536 - -0.6
533,536 - +0.1
533,536 - -0.4
533,545 + +0.6
533,545 + -1.0
533,545 + -1.2
533,545 + -0.4
533,545 + -0.2
533,545 + -0.7
533,545 + +1.3
533,546 - +0.5
533,546 - +0.8
533,546 - -0.2
533,546 - +0.9
533,546 - -0.3
533,546 - +1.3
533,546 - +0.6
533,546 - -0.7
533,750 + -2.2
533,757 + -0.4
533,804 + +0.1
533,804 + +0.3
533,804 + +0.7
533,805 - -1.0
533,805 - +0.7
533,805 - -0.1
534,419 + GFF493 0.21 -0.3
534,419 + GFF493 0.21 +1.0
534,420 - GFF493 0.21 +0.1
534,518 + GFF493 0.24 -0.9
534,518 + GFF493 0.24 -0.4
534,518 + GFF493 0.24 -1.0
534,518 + GFF493 0.24 -1.5
534,518 + GFF493 0.24 +0.2
534,518 + GFF493 0.24 -0.8
534,518 + GFF493 0.24 -1.5
534,518 + GFF493 0.24 -1.3
534,518 + GFF493 0.24 -1.4
534,518 + GFF493 0.24 -0.3
534,519 - GFF493 0.24 -0.2
534,519 - GFF493 0.24 -0.2
534,519 - GFF493 0.24 -0.2
534,519 - GFF493 0.24 -0.9
534,519 - GFF493 0.24 +0.6
534,519 - GFF493 0.24 +0.5
535,016 + GFF493 0.40 +0.3
535,016 + GFF493 0.40 +1.0
535,016 + GFF493 0.40 -0.4
535,017 - GFF493 0.40 +0.3
535,017 - GFF493 0.40 -1.2
535,056 + GFF493 0.41 -0.3
535,056 + GFF493 0.41 +0.5
535,056 + GFF493 0.41 +0.6
535,056 + GFF493 0.41 -1.2
535,057 - GFF493 0.41 -1.5
535,215 + GFF493 0.46 -0.0
535,301 + GFF493 0.49 -1.5
535,301 + GFF493 0.49 +0.1
535,301 + GFF493 0.49 -1.0
535,302 - GFF493 0.49 -0.2
535,302 - GFF493 0.49 -0.1
535,302 - GFF493 0.49 +2.1
535,302 - GFF493 0.49 +1.0
535,302 - GFF493 0.49 -1.5
535,302 - GFF493 0.49 -0.2
535,302 - GFF493 0.49 -0.3
535,302 - GFF493 0.49 -0.2
535,302 - GFF493 0.49 -0.3
535,391 + GFF493 0.52 -0.4
535,391 + GFF493 0.52 +0.2
535,391 + GFF493 0.52 +0.3
535,392 - GFF493 0.52 -0.4
535,392 - GFF493 0.52 -0.3
535,392 - GFF493 0.52 -0.4
535,454 + GFF493 0.54 +1.3
535,454 + GFF493 0.54 +0.6
535,454 + GFF493 0.54 +0.9
535,454 + GFF493 0.54 -0.0
535,454 + GFF493 0.54 +0.2
535,454 + GFF493 0.54 +0.7
535,454 + GFF493 0.54 +0.8
535,454 + GFF493 0.54 -0.6
535,455 - GFF493 0.54 +0.7
535,455 - GFF493 0.54 -0.4
535,455 - GFF493 0.54 -0.7
535,455 - GFF493 0.54 -1.3
535,455 - GFF493 0.54 -0.0
535,455 - GFF493 0.54 -0.1
535,553 + GFF493 0.57 +1.3
535,553 + GFF493 0.57 +0.1
535,553 + GFF493 0.57 +0.7
535,553 + GFF493 0.57 -0.6
535,554 - GFF493 0.57 -0.5
535,554 - GFF493 0.57 +0.7
535,554 - GFF493 0.57 +0.1
535,554 - GFF493 0.57 -0.4
535,554 - GFF493 0.57 +0.1
535,554 - GFF493 0.57 +0.1
535,554 - GFF493 0.57 +1.7
535,554 - GFF493 0.57 -0.9
535,554 - GFF493 0.57 +1.4
535,554 - GFF493 0.57 -0.1
535,554 - GFF493 0.57 -0.7
535,554 - GFF493 0.57 -0.5
535,578 - GFF493 0.58 +0.1
535,578 - GFF493 0.58 -0.2
535,669 + GFF493 0.61 -0.3
535,669 + GFF493 0.61 +0.4
535,670 - GFF493 0.61 -0.2
535,694 + GFF493 0.62 -0.0
535,694 + GFF493 0.62 +0.2
535,694 + GFF493 0.62 -0.1
535,694 + GFF493 0.62 +1.3
535,694 + GFF493 0.62 -1.5
535,695 - GFF493 0.62 -0.0
535,695 - GFF493 0.62 -1.3
535,695 - GFF493 0.62 +0.6
535,695 - GFF493 0.62 -0.5
535,772 + GFF493 0.64 +0.3
535,773 - GFF493 0.64 -0.0
535,773 - GFF493 0.64 +0.4
536,069 + GFF493 0.73 +1.5
536,069 + GFF493 0.73 +0.1
536,070 - GFF493 0.73 -0.1
536,070 - GFF493 0.73 -0.3
536,070 - GFF493 0.73 -0.9
536,309 + GFF493 0.81 -0.7
536,309 + GFF493 0.81 -1.0
536,309 + GFF493 0.81 -0.9
536,310 - GFF493 0.81 -1.8
536,310 - GFF493 0.81 -0.8
536,310 - GFF493 0.81 -0.3
536,411 + GFF493 0.84 +0.1
536,411 + GFF493 0.84 -1.1
536,411 + GFF493 0.84 -0.7
536,412 - GFF493 0.84 -0.0
536,438 + GFF493 0.85 +0.4
536,439 - GFF493 0.85 +1.3
536,439 - GFF493 0.85 -0.5
536,450 + GFF493 0.86 +0.9
536,450 + GFF493 0.86 -0.5
536,450 + GFF493 0.86 +0.4
536,451 - GFF493 0.86 +1.2
536,451 - GFF493 0.86 -1.2
536,451 - GFF493 0.86 -0.3
536,540 + GFF493 0.88 +0.1
536,540 + GFF493 0.88 +0.5
536,541 - GFF493 0.88 +1.3
536,541 - GFF493 0.88 -0.1
536,618 + +0.4
536,618 + -0.1
536,618 + -0.5
536,618 + -0.0
536,619 - +1.9
536,619 - +0.1
536,619 - +0.1
536,619 - -0.2
536,640 - +0.3
536,717 + +0.3
536,717 + -0.2
536,717 + -0.3
536,717 + -0.6
536,718 - -0.0
536,718 - -1.2
536,718 - +0.6
536,780 + -0.2
536,780 + -0.2
536,780 + +0.6
536,781 - +0.8
536,819 + -0.8
536,820 - -1.2
536,820 - -0.1
536,820 - -0.7
537,031 + GFF494 0.10 -0.0
537,031 + GFF494 0.10 +0.4
537,031 + GFF494 0.10 -0.0
537,031 + GFF494 0.10 -0.5
537,031 + GFF494 0.10 -0.1
537,031 + GFF494 0.10 -0.0
537,032 - GFF494 0.11 -0.3
537,032 - GFF494 0.11 -0.3
537,032 - GFF494 0.11 -0.2
537,283 + GFF494 0.31 -0.2
537,283 + GFF494 0.31 +0.4
537,283 + GFF494 0.31 +0.1
537,283 + GFF494 0.31 +0.2
537,283 + GFF494 0.31 -0.8
537,283 + GFF494 0.31 -0.1
537,284 - GFF494 0.31 -0.4
537,284 - GFF494 0.31 -0.0
537,284 - GFF494 0.31 +0.1
537,340 + GFF494 0.36 -0.2
537,340 + GFF494 0.36 -0.5
537,340 + GFF494 0.36 +0.5
537,340 + GFF494 0.36 +0.3
537,340 + GFF494 0.36 +0.7
537,340 + GFF494 0.36 -0.2
537,340 + GFF494 0.36 -0.1
537,340 + GFF494 0.36 -0.1
537,340 + GFF494 0.36 -0.7
537,341 - GFF494 0.36 -0.7
537,341 - GFF494 0.36 +0.3
537,341 - GFF494 0.36 +0.2
537,341 - GFF494 0.36 +0.3
537,341 - GFF494 0.36 -0.2
537,598 + GFF494 0.57 +0.1
537,598 + GFF494 0.57 -0.9
537,598 + GFF494 0.57 +0.0
537,598 + GFF494 0.57 +0.5
537,598 + GFF494 0.57 +0.3
537,598 + GFF494 0.57 -0.7
537,599 - GFF494 0.57 -0.5
537,599 - GFF494 0.57 -0.5
537,599 - GFF494 0.57 -0.1
537,599 - GFF494 0.57 +0.7
537,599 - GFF494 0.57 -0.0
537,599 - GFF494 0.57 -1.3
537,599 - GFF494 0.57 -1.1
537,599 - GFF494 0.57 -0.2
537,753 + GFF494 0.70 -0.2
537,753 + GFF494 0.70 -0.0
537,754 - GFF494 0.70 -1.1
537,815 - GFF494 0.75 -0.1
537,815 - GFF494 0.75 +0.1

Or see this region's nucleotide sequence