Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4927 and GFF4928 overlap by 4 nucleotides GFF4928 and GFF4929 overlap by 4 nucleotides
GFF4927 - Citrate-proton symporter, at 18,123 to 19,418
GFF4927
GFF4928 - hypothetical protein, at 19,415 to 21,757
GFF4928
GFF4929 - Aminotransferase, class III, at 21,754 to 23,166
GFF4929
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.423 kb on - strand, within GFF4927 at 18.433 kb on + strand, within GFF4927 at 18.433 kb on + strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.634 kb on + strand, within GFF4927 at 18.634 kb on + strand, within GFF4927 at 18.635 kb on - strand, within GFF4927 at 18.635 kb on - strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 19.153 kb on + strand, within GFF4927 at 19.153 kb on + strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.289 kb on - strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.597 kb on - strand at 19.597 kb on - strand at 19.597 kb on - strand at 19.647 kb on + strand at 19.647 kb on + strand at 19.648 kb on - strand at 19.648 kb on - strand at 19.648 kb on - strand at 19.657 kb on - strand, within GFF4928 at 19.657 kb on - strand, within GFF4928 at 19.908 kb on + strand, within GFF4928 at 19.909 kb on - strand, within GFF4928 at 20.028 kb on + strand, within GFF4928 at 20.029 kb on - strand, within GFF4928 at 20.139 kb on + strand, within GFF4928 at 20.139 kb on + strand, within GFF4928 at 20.140 kb on - strand, within GFF4928 at 20.140 kb on - strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.202 kb on + strand, within GFF4928 at 20.203 kb on - strand, within GFF4928 at 20.271 kb on + strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.331 kb on + strand, within GFF4928 at 20.331 kb on + strand, within GFF4928 at 20.332 kb on - strand, within GFF4928 at 20.332 kb on - strand, within GFF4928 at 20.409 kb on + strand, within GFF4928 at 20.409 kb on + strand, within GFF4928 at 20.410 kb on - strand, within GFF4928 at 20.460 kb on + strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.485 kb on - strand, within GFF4928 at 20.485 kb on - strand, within GFF4928 at 20.485 kb on - strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.499 kb on + strand, within GFF4928 at 20.499 kb on + strand, within GFF4928 at 20.500 kb on - strand, within GFF4928 at 20.500 kb on - strand, within GFF4928 at 20.500 kb on - strand, within GFF4928 at 20.595 kb on + strand, within GFF4928 at 20.683 kb on - strand, within GFF4928 at 20.709 kb on + strand, within GFF4928 at 20.710 kb on - strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.728 kb on - strand, within GFF4928 at 20.728 kb on - strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.851 kb on - strand, within GFF4928 at 21.084 kb on + strand, within GFF4928 at 21.084 kb on + strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.340 kb on - strand, within GFF4928 at 21.378 kb on + strand, within GFF4928 at 21.402 kb on + strand, within GFF4928 at 21.402 kb on + strand, within GFF4928 at 21.402 kb on + strand, within GFF4928 at 21.403 kb on - strand, within GFF4928 at 21.403 kb on - strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.621 kb on + strand at 21.621 kb on + strand at 21.621 kb on + strand at 21.621 kb on + strand at 21.622 kb on - strand at 21.622 kb on - strand at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.283 kb on + strand, within GFF4929 at 22.284 kb on - strand, within GFF4929 at 22.394 kb on + strand, within GFF4929 at 22.395 kb on - strand, within GFF4929 at 22.395 kb on - strand, within GFF4929 at 22.604 kb on + strand, within GFF4929 at 22.604 kb on + strand, within GFF4929 at 22.605 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.712 kb on + strand, within GFF4929 at 22.712 kb on + strand, within GFF4929 at 22.712 kb on + strand, within GFF4929 at 22.713 kb on - strand, within GFF4929
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 18,423 - GFF4927 0.23 +0.1 18,433 + GFF4927 0.24 -0.6 18,433 + GFF4927 0.24 +0.1 18,434 - GFF4927 0.24 -0.8 18,434 - GFF4927 0.24 -0.9 18,434 - GFF4927 0.24 -0.0 18,634 + GFF4927 0.39 +1.7 18,634 + GFF4927 0.39 -0.0 18,635 - GFF4927 0.40 +1.1 18,635 - GFF4927 0.40 +0.7 18,775 + GFF4927 0.50 +0.7 18,775 + GFF4927 0.50 -1.0 18,775 + GFF4927 0.50 +0.0 18,775 + GFF4927 0.50 +1.7 18,775 + GFF4927 0.50 -0.7 18,775 + GFF4927 0.50 -1.1 18,775 + GFF4927 0.50 -0.3 18,775 + GFF4927 0.50 +0.5 18,775 + GFF4927 0.50 -0.1 18,776 - GFF4927 0.50 +0.2 18,776 - GFF4927 0.50 -1.8 18,776 - GFF4927 0.50 -0.2 18,776 - GFF4927 0.50 -0.8 18,776 - GFF4927 0.50 -1.3 18,776 - GFF4927 0.50 -0.3 18,776 - GFF4927 0.50 +0.7 18,776 - GFF4927 0.50 -0.4 18,776 - GFF4927 0.50 -0.8 18,776 - GFF4927 0.50 -0.4 19,153 + GFF4927 0.79 +1.0 19,153 + GFF4927 0.79 -0.2 19,154 - GFF4927 0.80 -0.4 19,154 - GFF4927 0.80 -1.3 19,154 - GFF4927 0.80 +0.7 19,154 - GFF4927 0.80 -0.3 19,288 + GFF4927 0.90 +1.7 19,288 + GFF4927 0.90 -0.5 19,288 + GFF4927 0.90 -0.8 19,288 + GFF4927 0.90 -1.8 19,288 + GFF4927 0.90 -0.1 19,288 + GFF4927 0.90 -1.6 19,288 + GFF4927 0.90 +0.1 19,289 - -0.5 19,596 + +0.3 19,596 + +0.1 19,596 + -0.1 19,596 + -0.9 19,597 - +0.1 19,597 - +0.1 19,597 - +0.2 19,647 + -0.8 19,647 + -0.3 19,648 - -0.2 19,648 - +1.2 19,648 - -0.4 19,657 - GFF4928 0.10 +0.3 19,657 - GFF4928 0.10 -0.2 19,908 + GFF4928 0.21 -0.9 19,909 - GFF4928 0.21 -0.3 20,028 + GFF4928 0.26 +0.7 20,029 - GFF4928 0.26 +0.2 20,139 + GFF4928 0.31 +0.0 20,139 + GFF4928 0.31 +0.7 20,140 - GFF4928 0.31 +0.4 20,140 - GFF4928 0.31 +0.0 20,154 + GFF4928 0.32 +0.2 20,154 + GFF4928 0.32 -0.3 20,154 + GFF4928 0.32 +0.6 20,154 + GFF4928 0.32 -1.1 20,154 + GFF4928 0.32 +1.0 20,154 + GFF4928 0.32 -0.4 20,154 + GFF4928 0.32 -0.1 20,154 + GFF4928 0.32 -0.5 20,154 + GFF4928 0.32 -1.1 20,154 + GFF4928 0.32 -0.0 20,154 + GFF4928 0.32 -0.2 20,154 + GFF4928 0.32 -0.1 20,155 - GFF4928 0.32 -0.9 20,155 - GFF4928 0.32 -0.4 20,155 - GFF4928 0.32 -0.9 20,155 - GFF4928 0.32 +0.6 20,155 - GFF4928 0.32 +0.1 20,155 - GFF4928 0.32 +0.2 20,155 - GFF4928 0.32 +0.4 20,155 - GFF4928 0.32 -0.9 20,155 - GFF4928 0.32 +1.1 20,202 + GFF4928 0.34 +0.1 20,203 - GFF4928 0.34 -0.1 20,271 + GFF4928 0.37 +1.0 20,272 - GFF4928 0.37 +0.1 20,272 - GFF4928 0.37 -0.2 20,272 - GFF4928 0.37 -0.7 20,331 + GFF4928 0.39 -0.3 20,331 + GFF4928 0.39 -0.4 20,332 - GFF4928 0.39 +0.1 20,332 - GFF4928 0.39 +0.1 20,409 + GFF4928 0.42 -0.1 20,409 + GFF4928 0.42 -0.6 20,410 - GFF4928 0.42 +0.2 20,460 + GFF4928 0.45 -0.6 20,461 - GFF4928 0.45 -0.6 20,461 - GFF4928 0.45 -0.3 20,461 - GFF4928 0.45 -0.6 20,461 - GFF4928 0.45 +0.9 20,461 - GFF4928 0.45 -1.5 20,484 + GFF4928 0.46 +0.4 20,484 + GFF4928 0.46 -0.3 20,484 + GFF4928 0.46 +0.0 20,484 + GFF4928 0.46 -1.2 20,484 + GFF4928 0.46 +0.0 20,484 + GFF4928 0.46 -0.0 20,485 - GFF4928 0.46 -0.4 20,485 - GFF4928 0.46 -1.0 20,485 - GFF4928 0.46 -0.5 20,490 + GFF4928 0.46 +1.4 20,490 + GFF4928 0.46 -0.5 20,490 + GFF4928 0.46 +0.3 20,490 + GFF4928 0.46 +0.1 20,490 + GFF4928 0.46 +0.2 20,491 - GFF4928 0.46 -0.6 20,491 - GFF4928 0.46 -0.5 20,491 - GFF4928 0.46 +1.0 20,491 - GFF4928 0.46 +0.5 20,491 - GFF4928 0.46 +0.1 20,491 - GFF4928 0.46 +0.6 20,491 - GFF4928 0.46 -0.0 20,491 - GFF4928 0.46 -0.9 20,491 - GFF4928 0.46 -0.3 20,491 - GFF4928 0.46 -0.4 20,499 + GFF4928 0.46 -0.8 20,499 + GFF4928 0.46 +0.1 20,500 - GFF4928 0.46 +2.0 20,500 - GFF4928 0.46 -0.8 20,500 - GFF4928 0.46 +0.4 20,595 + GFF4928 0.50 -0.3 20,683 - GFF4928 0.54 +0.1 20,709 + GFF4928 0.55 -1.5 20,710 - GFF4928 0.55 -0.1 20,727 + GFF4928 0.56 +0.5 20,727 + GFF4928 0.56 -0.4 20,727 + GFF4928 0.56 +0.2 20,727 + GFF4928 0.56 -0.6 20,727 + GFF4928 0.56 +0.7 20,727 + GFF4928 0.56 -0.2 20,728 - GFF4928 0.56 -1.0 20,728 - GFF4928 0.56 +0.7 20,790 + GFF4928 0.59 +0.8 20,790 + GFF4928 0.59 +0.0 20,790 + GFF4928 0.59 -0.2 20,790 + GFF4928 0.59 -2.0 20,791 - GFF4928 0.59 +0.5 20,791 - GFF4928 0.59 +0.1 20,791 - GFF4928 0.59 +0.3 20,791 - GFF4928 0.59 +0.3 20,851 - GFF4928 0.61 -0.4 21,084 + GFF4928 0.71 +0.9 21,084 + GFF4928 0.71 +1.1 21,085 - GFF4928 0.71 -0.2 21,085 - GFF4928 0.71 -0.1 21,085 - GFF4928 0.71 -0.3 21,085 - GFF4928 0.71 +0.0 21,340 - GFF4928 0.82 -0.2 21,378 + GFF4928 0.84 -0.3 21,402 + GFF4928 0.85 +0.1 21,402 + GFF4928 0.85 +0.3 21,402 + GFF4928 0.85 +0.4 21,403 - GFF4928 0.85 -1.6 21,403 - GFF4928 0.85 -0.4 21,507 + GFF4928 0.89 -1.0 21,507 + GFF4928 0.89 -0.0 21,507 + GFF4928 0.89 +1.1 21,507 + GFF4928 0.89 -0.4 21,507 + GFF4928 0.89 +0.3 21,508 - GFF4928 0.89 -1.1 21,508 - GFF4928 0.89 -0.5 21,508 - GFF4928 0.89 +0.1 21,508 - GFF4928 0.89 +0.5 21,621 + +0.4 21,621 + -0.1 21,621 + +1.1 21,621 + +0.2 21,622 - +0.0 21,622 - +0.4 21,920 + GFF4929 0.12 -1.2 21,920 + GFF4929 0.12 -0.0 21,920 + GFF4929 0.12 -0.6 21,920 + GFF4929 0.12 -0.1 21,920 + GFF4929 0.12 +0.6 21,920 + GFF4929 0.12 -0.7 21,920 + GFF4929 0.12 -1.5 21,921 - GFF4929 0.12 +0.1 21,921 - GFF4929 0.12 +0.3 21,921 - GFF4929 0.12 -0.4 21,921 - GFF4929 0.12 -0.1 22,199 + GFF4929 0.31 -0.6 22,199 + GFF4929 0.31 +0.2 22,199 + GFF4929 0.31 +1.1 22,199 + GFF4929 0.31 +0.4 22,200 - GFF4929 0.32 +0.1 22,200 - GFF4929 0.32 -1.0 22,200 - GFF4929 0.32 -0.3 22,200 - GFF4929 0.32 -0.7 22,200 - GFF4929 0.32 -0.7 22,200 - GFF4929 0.32 +0.1 22,200 - GFF4929 0.32 -0.5 22,200 - GFF4929 0.32 +0.7 22,200 - GFF4929 0.32 +0.7 22,200 - GFF4929 0.32 -0.2 22,200 - GFF4929 0.32 +0.1 22,200 - GFF4929 0.32 -0.6 22,283 + GFF4929 0.37 +1.2 22,284 - GFF4929 0.38 -0.3 22,394 + GFF4929 0.45 -0.1 22,395 - GFF4929 0.45 +0.2 22,395 - GFF4929 0.45 -0.9 22,604 + GFF4929 0.60 +2.3 22,604 + GFF4929 0.60 -1.0 22,605 - GFF4929 0.60 +0.4 22,653 - GFF4929 0.64 -0.0 22,653 - GFF4929 0.64 -0.9 22,653 - GFF4929 0.64 -1.1 22,653 - GFF4929 0.64 -2.4 22,653 - GFF4929 0.64 -1.3 22,712 + GFF4929 0.68 -0.6 22,712 + GFF4929 0.68 +1.2 22,712 + GFF4929 0.68 -0.6 22,713 - GFF4929 0.68 -0.7
Or see this region's nucleotide sequence