Strain Fitness in Variovorax sp. SCN45 around GFF4690

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4689 and GFF4690 are separated by 10 nucleotidesGFF4690 and GFF4691 overlap by 11 nucleotides GFF4689 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB, at 49,375 to 50,763 GFF4689 GFF4690 - Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA, at 50,774 to 53,986 GFF4690 GFF4691 - Cobalt/zinc/cadmium resistance protein CzcD, at 53,976 to 54,887 GFF4691 Position (kb) 50 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.780 kb on - strand, within GFF4689at 49.843 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.036 kb on + strand, within GFF4689at 50.036 kb on + strand, within GFF4689at 50.037 kb on - strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.084 kb on - strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.411 kb on - strand, within GFF4689at 50.411 kb on - strand, within GFF4689at 50.695 kb on + strandat 50.695 kb on + strandat 50.696 kb on - strandat 50.865 kb on - strandat 50.897 kb on - strandat 51.035 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.246 kb on - strand, within GFF4690at 51.342 kb on - strand, within GFF4690at 51.360 kb on + strand, within GFF4690at 51.456 kb on - strand, within GFF4690at 51.456 kb on - strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.761 kb on + strand, within GFF4690at 51.761 kb on + strand, within GFF4690at 52.161 kb on - strand, within GFF4690at 52.161 kb on - strand, within GFF4690at 52.349 kb on + strand, within GFF4690at 52.350 kb on - strand, within GFF4690at 52.658 kb on + strand, within GFF4690at 52.658 kb on + strand, within GFF4690at 52.658 kb on + strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.764 kb on - strand, within GFF4690at 52.764 kb on - strand, within GFF4690at 53.366 kb on + strand, within GFF4690at 53.367 kb on - strand, within GFF4690at 53.390 kb on + strand, within GFF4690at 53.877 kb on - strandat 53.923 kb on + strandat 53.924 kb on - strandat 54.051 kb on + strandat 54.052 kb on - strandat 54.052 kb on - strandat 54.052 kb on - strandat 54.197 kb on + strand, within GFF4691at 54.197 kb on + strand, within GFF4691at 54.208 kb on - strand, within GFF4691at 54.211 kb on - strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.279 kb on + strand, within GFF4691at 54.427 kb on - strand, within GFF4691at 54.427 kb on - strand, within GFF4691at 54.427 kb on - strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.746 kb on - strand, within GFF4691at 54.746 kb on - strand, within GFF4691at 54.943 kb on + strandat 54.943 kb on + strandat 54.944 kb on - strandat 54.944 kb on - strandat 54.944 kb on - strandat 54.944 kb on - strandat 54.945 kb on + strandat 54.945 kb on + strandat 54.946 kb on - strandat 54.946 kb on - strandat 54.946 kb on - strandat 54.946 kb on - strandat 54.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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49,780 - GFF4689 0.29 -0.2
49,843 + GFF4689 0.34 +2.3
50,032 + GFF4689 0.47 +0.2
50,032 + GFF4689 0.47 +0.3
50,032 + GFF4689 0.47 -0.1
50,032 + GFF4689 0.47 -0.6
50,032 + GFF4689 0.47 -0.2
50,032 + GFF4689 0.47 -2.1
50,032 + GFF4689 0.47 -0.5
50,032 + GFF4689 0.47 -0.5
50,032 + GFF4689 0.47 -2.4
50,033 - GFF4689 0.47 -0.1
50,033 - GFF4689 0.47 +0.6
50,033 - GFF4689 0.47 +0.3
50,033 - GFF4689 0.47 -1.0
50,033 - GFF4689 0.47 -0.4
50,033 - GFF4689 0.47 -0.4
50,033 - GFF4689 0.47 +0.8
50,033 - GFF4689 0.47 -0.9
50,033 - GFF4689 0.47 +0.5
50,033 - GFF4689 0.47 +0.8
50,033 - GFF4689 0.47 -0.4
50,036 + GFF4689 0.48 +0.1
50,036 + GFF4689 0.48 -0.6
50,037 - GFF4689 0.48 +0.0
50,083 + GFF4689 0.51 -0.2
50,083 + GFF4689 0.51 +0.3
50,083 + GFF4689 0.51 +0.0
50,083 + GFF4689 0.51 +0.8
50,083 + GFF4689 0.51 -0.3
50,083 + GFF4689 0.51 -0.2
50,084 - GFF4689 0.51 -0.8
50,410 + GFF4689 0.75 +0.8
50,410 + GFF4689 0.75 +1.1
50,410 + GFF4689 0.75 -1.5
50,410 + GFF4689 0.75 -0.1
50,410 + GFF4689 0.75 -1.3
50,410 + GFF4689 0.75 -0.2
50,411 - GFF4689 0.75 +0.8
50,411 - GFF4689 0.75 +0.0
50,695 + -0.2
50,695 + +0.8
50,696 - +0.5
50,865 - +0.1
50,897 - -0.0
51,035 + +1.5
51,083 + +0.1
51,083 + +1.0
51,083 + +0.9
51,083 + +0.4
51,083 + +0.3
51,083 + -0.9
51,083 + -0.2
51,083 + -0.1
51,083 + +0.3
51,083 + -0.7
51,084 - -0.2
51,084 - +0.9
51,084 - +0.5
51,084 - -0.7
51,191 + GFF4690 0.13 -0.6
51,191 + GFF4690 0.13 -0.2
51,191 + GFF4690 0.13 -1.7
51,191 + GFF4690 0.13 -0.2
51,191 + GFF4690 0.13 -0.5
51,191 + GFF4690 0.13 -0.7
51,191 + GFF4690 0.13 +0.5
51,192 - GFF4690 0.13 +0.5
51,192 - GFF4690 0.13 -1.2
51,192 - GFF4690 0.13 +0.5
51,192 - GFF4690 0.13 -0.1
51,246 - GFF4690 0.15 -0.2
51,342 - GFF4690 0.18 -0.4
51,360 + GFF4690 0.18 -0.4
51,456 - GFF4690 0.21 -0.0
51,456 - GFF4690 0.21 -1.8
51,479 + GFF4690 0.22 -0.0
51,479 + GFF4690 0.22 +0.0
51,479 + GFF4690 0.22 +0.0
51,479 + GFF4690 0.22 +0.3
51,480 - GFF4690 0.22 +0.3
51,480 - GFF4690 0.22 +0.3
51,480 - GFF4690 0.22 -0.2
51,480 - GFF4690 0.22 -0.3
51,480 - GFF4690 0.22 +0.9
51,761 + GFF4690 0.31 -0.4
51,761 + GFF4690 0.31 -0.5
52,161 - GFF4690 0.43 +0.8
52,161 - GFF4690 0.43 +1.3
52,349 + GFF4690 0.49 -0.8
52,350 - GFF4690 0.49 -0.7
52,658 + GFF4690 0.59 +0.3
52,658 + GFF4690 0.59 -0.5
52,658 + GFF4690 0.59 +0.7
52,659 - GFF4690 0.59 +2.9
52,659 - GFF4690 0.59 +0.6
52,659 - GFF4690 0.59 -0.2
52,659 - GFF4690 0.59 -0.1
52,763 + GFF4690 0.62 -0.3
52,763 + GFF4690 0.62 -0.2
52,763 + GFF4690 0.62 +0.4
52,763 + GFF4690 0.62 -0.2
52,763 + GFF4690 0.62 +0.3
52,763 + GFF4690 0.62 -0.5
52,763 + GFF4690 0.62 -0.3
52,764 - GFF4690 0.62 +0.8
52,764 - GFF4690 0.62 +0.2
53,366 + GFF4690 0.81 -0.8
53,367 - GFF4690 0.81 +0.8
53,390 + GFF4690 0.81 +0.6
53,877 - -0.6
53,923 + -1.5
53,924 - +0.1
54,051 + -1.0
54,052 - +0.3
54,052 - +0.1
54,052 - -0.3
54,197 + GFF4691 0.24 +0.3
54,197 + GFF4691 0.24 +0.5
54,208 - GFF4691 0.25 -0.1
54,211 - GFF4691 0.26 -1.2
54,270 + GFF4691 0.32 -1.1
54,270 + GFF4691 0.32 +0.1
54,270 + GFF4691 0.32 -0.6
54,270 + GFF4691 0.32 +1.2
54,271 - GFF4691 0.32 -0.2
54,271 - GFF4691 0.32 -0.6
54,271 - GFF4691 0.32 +0.3
54,271 - GFF4691 0.32 -0.3
54,271 - GFF4691 0.32 +0.1
54,271 - GFF4691 0.32 +0.2
54,271 - GFF4691 0.32 +0.3
54,271 - GFF4691 0.32 -0.7
54,271 - GFF4691 0.32 -0.0
54,271 - GFF4691 0.32 +0.3
54,279 + GFF4691 0.33 +0.1
54,427 - GFF4691 0.49 +0.5
54,427 - GFF4691 0.49 -1.2
54,427 - GFF4691 0.49 -0.1
54,745 + GFF4691 0.84 +0.6
54,745 + GFF4691 0.84 +0.3
54,745 + GFF4691 0.84 -1.4
54,745 + GFF4691 0.84 +0.0
54,746 - GFF4691 0.84 +0.6
54,746 - GFF4691 0.84 +0.9
54,943 + +0.0
54,943 + +0.1
54,944 - -0.0
54,944 - -0.8
54,944 - -0.3
54,944 - -0.4
54,945 + -0.5
54,945 + +0.3
54,946 - -0.9
54,946 - -0.7
54,946 - +0.2
54,946 - -0.6
54,946 - -0.1

Or see this region's nucleotide sequence