Strain Fitness in Variovorax sp. SCN45 around GFF4678

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4677 and GFF4678 overlap by 1 nucleotidesGFF4678 and GFF4679 overlap by 1 nucleotides GFF4677 - Small-conductance mechanosensitive channel, at 35,034 to 36,113 GFF4677 GFF4678 - FIG00348290: hypothetical protein, at 36,113 to 38,359 GFF4678 GFF4679 - Inositol-1-monophosphatase (EC 3.1.3.25), at 38,359 to 39,423 GFF4679 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 35.330 kb on - strand, within GFF4677at 35.338 kb on + strand, within GFF4677at 35.407 kb on + strand, within GFF4677at 35.407 kb on + strand, within GFF4677at 35.407 kb on + strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 36.026 kb on + strandat 36.073 kb on + strandat 36.099 kb on + strandat 36.099 kb on + strandat 36.100 kb on - strandat 36.100 kb on - strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.332 kb on - strandat 36.332 kb on - strandat 36.332 kb on - strandat 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.460 kb on - strand, within GFF4678at 36.460 kb on - strand, within GFF4678at 36.460 kb on - strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.565 kb on - strand, within GFF4678at 36.565 kb on - strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.824 kb on + strand, within GFF4678at 36.824 kb on + strand, within GFF4678at 36.825 kb on - strand, within GFF4678at 36.825 kb on - strand, within GFF4678at 36.864 kb on + strand, within GFF4678at 36.865 kb on - strand, within GFF4678at 36.865 kb on - strand, within GFF4678at 37.065 kb on + strand, within GFF4678at 37.065 kb on + strand, within GFF4678at 37.066 kb on - strand, within GFF4678at 37.066 kb on - strand, within GFF4678at 37.591 kb on - strand, within GFF4678at 37.806 kb on + strand, within GFF4678at 37.807 kb on - strand, within GFF4678at 37.807 kb on - strand, within GFF4678at 37.807 kb on - strand, within GFF4678at 37.807 kb on - strand, within GFF4678at 37.807 kb on - strand, within GFF4678at 37.882 kb on - strand, within GFF4678at 38.295 kb on + strandat 38.295 kb on + strandat 38.295 kb on + strandat 38.295 kb on + strandat 38.296 kb on - strandat 38.296 kb on - strandat 38.296 kb on - strandat 38.296 kb on - strandat 38.296 kb on - strandat 38.296 kb on - strandat 38.522 kb on + strand, within GFF4679at 38.522 kb on + strand, within GFF4679at 38.522 kb on + strand, within GFF4679at 38.523 kb on - strand, within GFF4679at 38.523 kb on - strand, within GFF4679at 38.523 kb on - strand, within GFF4679at 38.523 kb on - strand, within GFF4679at 38.627 kb on + strand, within GFF4679at 38.627 kb on + strand, within GFF4679at 38.627 kb on + strand, within GFF4679at 38.628 kb on - strand, within GFF4679at 38.628 kb on - strand, within GFF4679

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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35,330 - GFF4677 0.27 -0.6
35,338 + GFF4677 0.28 -0.5
35,407 + GFF4677 0.35 +0.2
35,407 + GFF4677 0.35 -0.2
35,407 + GFF4677 0.35 -1.2
35,408 - GFF4677 0.35 -0.0
35,408 - GFF4677 0.35 -0.8
35,408 - GFF4677 0.35 -1.3
35,408 - GFF4677 0.35 -0.3
35,408 - GFF4677 0.35 -0.4
35,408 - GFF4677 0.35 +0.1
35,408 - GFF4677 0.35 +0.0
35,408 - GFF4677 0.35 -0.1
35,408 - GFF4677 0.35 +0.2
35,408 - GFF4677 0.35 -0.3
36,026 + -0.2
36,073 + +0.2
36,099 + -0.2
36,099 + +0.3
36,100 - +0.2
36,100 - +0.1
36,331 + -0.5
36,331 + -0.2
36,331 + -0.7
36,331 + -0.8
36,331 + -0.2
36,331 + -0.2
36,332 - -0.7
36,332 - -0.3
36,332 - -0.5
36,459 + GFF4678 0.15 -0.4
36,459 + GFF4678 0.15 +0.2
36,459 + GFF4678 0.15 -0.7
36,459 + GFF4678 0.15 -1.1
36,459 + GFF4678 0.15 +1.3
36,460 - GFF4678 0.15 -0.9
36,460 - GFF4678 0.15 -1.5
36,460 - GFF4678 0.15 -0.1
36,564 + GFF4678 0.20 -0.4
36,564 + GFF4678 0.20 +0.4
36,564 + GFF4678 0.20 -0.5
36,564 + GFF4678 0.20 -0.5
36,565 - GFF4678 0.20 -1.1
36,565 - GFF4678 0.20 +0.8
36,723 + GFF4678 0.27 -0.7
36,723 + GFF4678 0.27 -1.6
36,723 + GFF4678 0.27 +0.2
36,723 + GFF4678 0.27 -0.6
36,723 + GFF4678 0.27 -1.5
36,724 - GFF4678 0.27 -0.8
36,724 - GFF4678 0.27 -0.0
36,724 - GFF4678 0.27 +0.8
36,724 - GFF4678 0.27 -0.4
36,724 - GFF4678 0.27 +0.1
36,724 - GFF4678 0.27 +0.9
36,724 - GFF4678 0.27 +2.1
36,824 + GFF4678 0.32 -2.2
36,824 + GFF4678 0.32 +0.3
36,825 - GFF4678 0.32 +0.0
36,825 - GFF4678 0.32 -0.4
36,864 + GFF4678 0.33 -0.2
36,865 - GFF4678 0.33 -0.3
36,865 - GFF4678 0.33 -0.5
37,065 + GFF4678 0.42 +0.5
37,065 + GFF4678 0.42 +1.0
37,066 - GFF4678 0.42 -0.3
37,066 - GFF4678 0.42 -0.2
37,591 - GFF4678 0.66 -1.5
37,806 + GFF4678 0.75 +0.2
37,807 - GFF4678 0.75 -0.3
37,807 - GFF4678 0.75 -1.0
37,807 - GFF4678 0.75 -0.2
37,807 - GFF4678 0.75 -1.8
37,807 - GFF4678 0.75 +1.2
37,882 - GFF4678 0.79 -0.3
38,295 + +0.1
38,295 + +0.0
38,295 + +1.0
38,295 + -0.1
38,296 - +0.1
38,296 - -2.0
38,296 - +0.9
38,296 - -0.6
38,296 - -0.1
38,296 - -1.8
38,522 + GFF4679 0.15 -0.8
38,522 + GFF4679 0.15 +0.4
38,522 + GFF4679 0.15 +0.6
38,523 - GFF4679 0.15 -0.4
38,523 - GFF4679 0.15 +0.1
38,523 - GFF4679 0.15 +1.3
38,523 - GFF4679 0.15 -0.4
38,627 + GFF4679 0.25 -1.1
38,627 + GFF4679 0.25 -1.0
38,627 + GFF4679 0.25 -0.2
38,628 - GFF4679 0.25 -1.8
38,628 - GFF4679 0.25 +0.2

Or see this region's nucleotide sequence