Strain Fitness in Variovorax sp. SCN45 around GFF4667

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4666 and GFF4667 are separated by 23 nucleotidesGFF4667 and GFF4668 are separated by 155 nucleotides GFF4666 - Arylsulfatase (EC 3.1.6.1), at 22,687 to 24,015 GFF4666 GFF4667 - hypothetical protein, at 24,039 to 25,037 GFF4667 GFF4668 - hypothetical protein, at 25,193 to 26,209 GFF4668 Position (kb) 24 25 26Strain fitness (log2 ratio) -1 0 1at 23.313 kb on - strand, within GFF4666at 23.414 kb on + strand, within GFF4666at 23.414 kb on + strand, within GFF4666at 23.415 kb on - strand, within GFF4666at 23.415 kb on - strand, within GFF4666at 23.415 kb on - strand, within GFF4666at 23.415 kb on - strand, within GFF4666at 23.415 kb on - strand, within GFF4666at 23.477 kb on + strand, within GFF4666at 23.477 kb on + strand, within GFF4666at 23.477 kb on + strand, within GFF4666at 23.478 kb on - strand, within GFF4666at 23.513 kb on + strand, within GFF4666at 23.513 kb on + strand, within GFF4666at 23.513 kb on + strand, within GFF4666at 23.513 kb on + strand, within GFF4666at 23.513 kb on + strand, within GFF4666at 23.514 kb on - strand, within GFF4666at 23.514 kb on - strand, within GFF4666at 23.514 kb on - strand, within GFF4666at 23.585 kb on + strand, within GFF4666at 23.585 kb on + strand, within GFF4666at 23.585 kb on + strand, within GFF4666at 23.585 kb on + strand, within GFF4666at 23.586 kb on - strand, within GFF4666at 23.624 kb on + strand, within GFF4666at 23.694 kb on - strand, within GFF4666at 23.867 kb on + strand, within GFF4666at 23.867 kb on + strand, within GFF4666at 23.867 kb on + strand, within GFF4666at 23.867 kb on + strand, within GFF4666at 23.867 kb on + strand, within GFF4666at 23.867 kb on + strand, within GFF4666at 23.868 kb on - strand, within GFF4666at 23.868 kb on - strand, within GFF4666at 23.868 kb on - strand, within GFF4666at 23.868 kb on - strand, within GFF4666at 23.951 kb on + strandat 23.951 kb on + strandat 23.951 kb on + strandat 23.951 kb on + strandat 23.952 kb on - strandat 23.952 kb on - strandat 23.952 kb on - strandat 23.952 kb on - strandat 23.952 kb on - strandat 23.969 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.015 kb on + strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.016 kb on - strandat 24.064 kb on - strandat 24.089 kb on - strandat 24.634 kb on + strand, within GFF4667at 24.635 kb on - strand, within GFF4667at 24.635 kb on - strand, within GFF4667at 24.680 kb on - strand, within GFF4667at 24.680 kb on - strand, within GFF4667at 24.896 kb on - strand, within GFF4667at 25.410 kb on + strand, within GFF4668at 25.410 kb on + strand, within GFF4668at 25.410 kb on + strand, within GFF4668at 25.411 kb on - strand, within GFF4668at 25.614 kb on + strand, within GFF4668at 25.614 kb on + strand, within GFF4668at 25.615 kb on - strand, within GFF4668at 25.615 kb on - strand, within GFF4668

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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23,313 - GFF4666 0.47 +0.1
23,414 + GFF4666 0.55 +0.2
23,414 + GFF4666 0.55 +0.2
23,415 - GFF4666 0.55 -0.2
23,415 - GFF4666 0.55 -1.0
23,415 - GFF4666 0.55 -0.2
23,415 - GFF4666 0.55 -0.3
23,415 - GFF4666 0.55 -1.0
23,477 + GFF4666 0.59 -0.3
23,477 + GFF4666 0.59 -0.5
23,477 + GFF4666 0.59 +0.9
23,478 - GFF4666 0.60 -0.2
23,513 + GFF4666 0.62 -1.0
23,513 + GFF4666 0.62 +0.0
23,513 + GFF4666 0.62 -0.2
23,513 + GFF4666 0.62 +0.1
23,513 + GFF4666 0.62 -0.5
23,514 - GFF4666 0.62 -1.1
23,514 - GFF4666 0.62 -0.6
23,514 - GFF4666 0.62 +0.3
23,585 + GFF4666 0.68 -0.3
23,585 + GFF4666 0.68 -0.0
23,585 + GFF4666 0.68 -1.5
23,585 + GFF4666 0.68 +0.3
23,586 - GFF4666 0.68 -0.4
23,624 + GFF4666 0.71 -0.6
23,694 - GFF4666 0.76 -0.1
23,867 + GFF4666 0.89 -0.8
23,867 + GFF4666 0.89 -0.4
23,867 + GFF4666 0.89 -0.5
23,867 + GFF4666 0.89 -0.4
23,867 + GFF4666 0.89 +0.0
23,867 + GFF4666 0.89 -0.4
23,868 - GFF4666 0.89 +0.3
23,868 - GFF4666 0.89 +0.8
23,868 - GFF4666 0.89 -0.8
23,868 - GFF4666 0.89 -0.8
23,951 + -0.0
23,951 + -1.1
23,951 + +0.9
23,951 + -0.5
23,952 - -0.5
23,952 - -0.0
23,952 - +0.3
23,952 - -0.1
23,952 - -0.7
23,969 + -0.3
24,015 + -1.1
24,015 + -0.6
24,015 + -0.6
24,015 + -0.0
24,015 + -0.4
24,015 + +0.0
24,015 + -0.5
24,015 + -1.4
24,015 + +0.1
24,015 + -0.9
24,015 + +0.2
24,015 + +0.6
24,015 + +0.6
24,015 + -0.0
24,016 - -0.1
24,016 - -0.1
24,016 - +0.0
24,016 - +0.8
24,016 - -0.8
24,016 - +0.7
24,016 - +0.3
24,016 - -0.8
24,016 - -0.1
24,016 - -0.6
24,016 - -0.8
24,016 - -0.3
24,016 - -0.1
24,016 - -1.2
24,016 - -0.5
24,016 - -0.2
24,064 - +0.2
24,089 - -0.1
24,634 + GFF4667 0.60 +0.6
24,635 - GFF4667 0.60 -0.2
24,635 - GFF4667 0.60 +0.3
24,680 - GFF4667 0.64 -1.7
24,680 - GFF4667 0.64 +0.4
24,896 - GFF4667 0.86 +0.5
25,410 + GFF4668 0.21 +0.2
25,410 + GFF4668 0.21 -0.2
25,410 + GFF4668 0.21 -1.7
25,411 - GFF4668 0.21 +0.5
25,614 + GFF4668 0.41 +0.0
25,614 + GFF4668 0.41 -0.7
25,615 - GFF4668 0.41 +0.8
25,615 - GFF4668 0.41 -0.7

Or see this region's nucleotide sequence