Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4253 and GFF4254 are separated by 152 nucleotides GFF4254 and GFF4255 overlap by 4 nucleotides GFF4255 and GFF4256 are separated by 112 nucleotides
GFF4253 - hypothetical protein, at 168,861 to 169,838
GFF4253
GFF4254 - hypothetical protein, at 169,991 to 170,362
GFF4254
GFF4255 - no description, at 170,359 to 171,402
GFF4255
GFF4256 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 171,515 to 172,588
GFF4256
Position (kb) 170
171
172 Strain fitness (log2 ratio) -1
0
1
2
3 at 169.596 kb on + strand, within GFF4253 at 169.597 kb on - strand, within GFF4253 at 169.597 kb on - strand, within GFF4253 at 169.764 kb on + strand at 169.803 kb on + strand at 169.804 kb on - strand at 169.926 kb on + strand at 169.926 kb on + strand at 169.926 kb on + strand at 169.926 kb on + strand at 169.927 kb on - strand at 169.927 kb on - strand at 169.927 kb on - strand at 170.156 kb on + strand, within GFF4254 at 170.270 kb on + strand, within GFF4254 at 170.271 kb on - strand, within GFF4254 at 170.360 kb on + strand at 170.360 kb on + strand at 170.360 kb on + strand at 170.360 kb on + strand at 170.360 kb on + strand at 170.361 kb on - strand at 170.870 kb on + strand, within GFF4255 at 170.870 kb on + strand, within GFF4255 at 170.870 kb on + strand, within GFF4255 at 170.870 kb on + strand, within GFF4255 at 170.871 kb on - strand, within GFF4255 at 170.871 kb on - strand, within GFF4255 at 170.871 kb on - strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.882 kb on + strand, within GFF4255 at 170.927 kb on + strand, within GFF4255 at 170.944 kb on + strand, within GFF4255 at 170.945 kb on - strand, within GFF4255 at 171.406 kb on + strand at 171.406 kb on + strand at 171.448 kb on + strand at 171.453 kb on - strand at 171.536 kb on + strand at 171.615 kb on - strand at 171.720 kb on - strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 172.092 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.364 kb on + strand, within GFF4256 at 172.365 kb on - strand, within GFF4256
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 169,596 + GFF4253 0.75 -1.0 169,597 - GFF4253 0.75 +0.6 169,597 - GFF4253 0.75 +0.3 169,764 + +0.4 169,803 + +0.9 169,804 - -0.8 169,926 + -0.1 169,926 + +0.3 169,926 + -0.4 169,926 + +0.1 169,927 - +0.0 169,927 - -0.2 169,927 - -0.4 170,156 + GFF4254 0.44 +0.0 170,270 + GFF4254 0.75 -0.2 170,271 - GFF4254 0.75 -0.1 170,360 + +0.9 170,360 + +0.1 170,360 + +3.6 170,360 + +0.6 170,360 + -0.1 170,361 - -0.6 170,870 + GFF4255 0.49 -0.7 170,870 + GFF4255 0.49 +0.0 170,870 + GFF4255 0.49 -0.7 170,870 + GFF4255 0.49 -0.2 170,871 - GFF4255 0.49 -0.1 170,871 - GFF4255 0.49 +0.6 170,871 - GFF4255 0.49 +0.8 170,882 + GFF4255 0.50 +1.2 170,882 + GFF4255 0.50 +1.0 170,882 + GFF4255 0.50 -0.5 170,882 + GFF4255 0.50 +0.3 170,927 + GFF4255 0.54 +0.2 170,944 + GFF4255 0.56 +0.1 170,945 - GFF4255 0.56 +0.3 171,406 + -0.7 171,406 + +0.3 171,448 + -0.7 171,453 - -0.4 171,536 + -0.2 171,615 - -0.6 171,720 - GFF4256 0.19 -0.1 171,917 + GFF4256 0.37 -0.3 171,917 + GFF4256 0.37 +1.1 171,995 + GFF4256 0.45 -0.7 171,995 + GFF4256 0.45 -0.7 171,995 + GFF4256 0.45 +0.1 171,996 - GFF4256 0.45 -0.1 171,996 - GFF4256 0.45 -1.7 171,996 - GFF4256 0.45 -0.3 172,092 + GFF4256 0.54 -0.1 172,304 + GFF4256 0.73 -0.3 172,304 + GFF4256 0.73 -1.6 172,364 + GFF4256 0.79 -1.0 172,365 - GFF4256 0.79 -0.6
Or see this region's nucleotide sequence