Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4140 and GFF4141 overlap by 4 nucleotides GFF4141 and GFF4142 are separated by 27 nucleotides GFF4142 and GFF4143 are separated by 31 nucleotides GFF4143 and GFF4144 are separated by 55 nucleotides GFF4144 and GFF4145 are separated by 77 nucleotides
GFF4140 - no description, at 49,838 to 50,137
GFF4140
GFF4141 - no description, at 50,134 to 50,250
GFF4141
GFF4142 - no description, at 50,278 to 50,634
GFF4142
GFF4143 - Dihydrofolate reductase (EC 1.5.1.3), at 50,666 to 51,238
GFF4143
GFF4144 - Prolyl endopeptidase (EC 3.4.21.26), at 51,294 to 51,686
GFF4144
GFF4145 - transcriptional regulators-like protein, at 51,764 to 52,654
GFF4145
Position (kb) 50
51
52 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.111 kb on + strand at 50.249 kb on - strand at 50.294 kb on - strand at 50.329 kb on + strand, within GFF4142 at 50.336 kb on - strand, within GFF4142 at 50.519 kb on - strand, within GFF4142 at 50.603 kb on - strand at 50.603 kb on - strand at 50.633 kb on - strand at 50.759 kb on - strand, within GFF4143 at 51.142 kb on - strand, within GFF4143 at 51.142 kb on - strand, within GFF4143 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.461 kb on - strand, within GFF4144 at 51.461 kb on - strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.626 kb on - strand, within GFF4144 at 51.734 kb on - strand at 51.734 kb on - strand at 51.982 kb on - strand, within GFF4145
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 50,111 + -1.2 50,249 - -0.3 50,294 - -0.8 50,329 + GFF4142 0.14 -0.3 50,336 - GFF4142 0.16 -0.7 50,519 - GFF4142 0.68 +0.3 50,603 - +0.0 50,603 - -0.4 50,633 - +0.4 50,759 - GFF4143 0.16 -2.1 51,142 - GFF4143 0.83 +1.6 51,142 - GFF4143 0.83 -0.6 51,460 + GFF4144 0.42 -0.0 51,460 + GFF4144 0.42 -0.1 51,460 + GFF4144 0.42 +0.4 51,460 + GFF4144 0.42 +0.8 51,460 + GFF4144 0.42 +0.0 51,461 - GFF4144 0.42 -0.4 51,461 - GFF4144 0.42 +2.0 51,625 + GFF4144 0.84 +0.4 51,625 + GFF4144 0.84 -0.0 51,625 + GFF4144 0.84 +0.0 51,626 - GFF4144 0.84 -0.3 51,734 - -0.8 51,734 - -0.9 51,982 - GFF4145 0.24 -1.2
Or see this region's nucleotide sequence