Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3932 and GFF3933 are separated by 142 nucleotides GFF3933 and GFF3934 are separated by 37 nucleotides GFF3934 and GFF3935 overlap by 4 nucleotides
GFF3932 - Acetyltransferase, GNAT family, at 136,764 to 137,192
GFF3932
GFF3933 - PhnB protein, at 137,335 to 137,766
GFF3933
GFF3934 - PhnB protein, at 137,804 to 138,229
GFF3934
GFF3935 - RNA polymerase ECF-type sigma factor, at 138,226 to 139,518
GFF3935
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1
2 at 136.929 kb on + strand, within GFF3932 at 136.929 kb on + strand, within GFF3932 at 136.929 kb on + strand, within GFF3932 at 136.929 kb on + strand, within GFF3932 at 136.930 kb on - strand, within GFF3932 at 136.930 kb on - strand, within GFF3932 at 136.930 kb on - strand, within GFF3932 at 136.960 kb on - strand, within GFF3932 at 136.960 kb on - strand, within GFF3932 at 136.960 kb on - strand, within GFF3932 at 136.974 kb on + strand, within GFF3932 at 136.975 kb on - strand, within GFF3932 at 136.975 kb on - strand, within GFF3932 at 137.073 kb on + strand, within GFF3932 at 137.073 kb on + strand, within GFF3932 at 137.074 kb on - strand, within GFF3932 at 137.074 kb on - strand, within GFF3932 at 137.181 kb on + strand at 137.181 kb on + strand at 137.182 kb on - strand at 137.224 kb on + strand at 137.837 kb on + strand at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 138.841 kb on + strand, within GFF3935 at 138.841 kb on + strand, within GFF3935 at 138.841 kb on + strand, within GFF3935 at 138.841 kb on + strand, within GFF3935 at 138.841 kb on + strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.842 kb on - strand, within GFF3935 at 138.862 kb on + strand, within GFF3935 at 138.862 kb on + strand, within GFF3935 at 138.863 kb on - strand, within GFF3935 at 138.863 kb on - strand, within GFF3935 at 138.863 kb on - strand, within GFF3935 at 138.965 kb on + strand, within GFF3935 at 138.965 kb on + strand, within GFF3935 at 138.966 kb on - strand, within GFF3935 at 139.144 kb on + strand, within GFF3935 at 139.145 kb on - strand, within GFF3935 at 139.228 kb on + strand, within GFF3935 at 139.228 kb on + strand, within GFF3935 at 139.228 kb on + strand, within GFF3935 at 139.228 kb on + strand, within GFF3935 at 139.228 kb on + strand, within GFF3935 at 139.229 kb on - strand, within GFF3935 at 139.229 kb on - strand, within GFF3935 at 139.229 kb on - strand, within GFF3935 at 139.229 kb on - strand, within GFF3935
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 136,929 + GFF3932 0.38 +0.6 136,929 + GFF3932 0.38 -0.8 136,929 + GFF3932 0.38 +1.9 136,929 + GFF3932 0.38 -0.3 136,930 - GFF3932 0.39 -1.1 136,930 - GFF3932 0.39 +1.3 136,930 - GFF3932 0.39 +0.1 136,960 - GFF3932 0.46 -0.1 136,960 - GFF3932 0.46 -0.4 136,960 - GFF3932 0.46 -0.2 136,974 + GFF3932 0.49 -0.2 136,975 - GFF3932 0.49 +0.2 136,975 - GFF3932 0.49 -0.9 137,073 + GFF3932 0.72 +0.5 137,073 + GFF3932 0.72 -0.9 137,074 - GFF3932 0.72 +0.0 137,074 - GFF3932 0.72 +0.8 137,181 + +0.4 137,181 + -0.0 137,182 - +2.5 137,224 + -0.1 137,837 + -1.0 137,901 - GFF3934 0.23 +0.6 137,901 - GFF3934 0.23 +0.2 137,901 - GFF3934 0.23 +0.0 137,901 - GFF3934 0.23 +2.5 137,901 - GFF3934 0.23 +0.1 137,901 - GFF3934 0.23 +1.5 138,841 + GFF3935 0.48 +0.1 138,841 + GFF3935 0.48 +1.5 138,841 + GFF3935 0.48 +0.1 138,841 + GFF3935 0.48 -0.2 138,841 + GFF3935 0.48 +0.2 138,842 - GFF3935 0.48 -0.7 138,842 - GFF3935 0.48 -1.1 138,842 - GFF3935 0.48 +1.3 138,842 - GFF3935 0.48 -0.4 138,842 - GFF3935 0.48 -1.3 138,842 - GFF3935 0.48 +0.4 138,842 - GFF3935 0.48 +0.2 138,842 - GFF3935 0.48 -1.7 138,842 - GFF3935 0.48 -0.5 138,862 + GFF3935 0.49 +0.3 138,862 + GFF3935 0.49 +0.3 138,863 - GFF3935 0.49 +0.8 138,863 - GFF3935 0.49 +0.4 138,863 - GFF3935 0.49 -0.1 138,965 + GFF3935 0.57 +0.3 138,965 + GFF3935 0.57 -0.2 138,966 - GFF3935 0.57 +1.9 139,144 + GFF3935 0.71 -0.8 139,145 - GFF3935 0.71 -0.2 139,228 + GFF3935 0.77 +0.3 139,228 + GFF3935 0.77 -0.0 139,228 + GFF3935 0.77 -0.5 139,228 + GFF3935 0.77 -0.5 139,228 + GFF3935 0.77 -0.5 139,229 - GFF3935 0.78 +0.8 139,229 - GFF3935 0.78 +0.7 139,229 - GFF3935 0.78 -0.4 139,229 - GFF3935 0.78 +1.5
Or see this region's nucleotide sequence