Strain Fitness in Variovorax sp. SCN45 around GFF3814

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3814 and GFF3815 are separated by 15 nucleotidesGFF3815 and GFF3816 are separated by 86 nucleotides GFF3814 - OpgC protein, at 233 to 1,375 GFF3814 GFF3815 - FIG00347597: hypothetical protein, at 1,391 to 2,164 GFF3815 GFF3816 - hypothetical protein, at 2,251 to 3,021 GFF3816 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.132 kb on + strandat 0.132 kb on + strandat 0.132 kb on + strandat 0.132 kb on + strandat 0.132 kb on + strandat 0.132 kb on + strandat 0.132 kb on + strandat 0.133 kb on - strandat 0.133 kb on - strandat 0.133 kb on - strandat 0.133 kb on - strandat 0.133 kb on - strandat 0.133 kb on - strandat 0.133 kb on - strandat 0.133 kb on - strandat 0.172 kb on + strandat 0.172 kb on + strandat 0.172 kb on + strandat 0.172 kb on + strandat 0.173 kb on - strandat 0.243 kb on - strandat 0.252 kb on + strandat 0.253 kb on - strandat 0.398 kb on + strand, within GFF3814at 0.470 kb on + strand, within GFF3814at 0.470 kb on + strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.569 kb on + strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.600 kb on - strand, within GFF3814at 0.600 kb on - strand, within GFF3814at 0.600 kb on - strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.618 kb on - strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.776 kb on + strand, within GFF3814at 0.776 kb on + strand, within GFF3814at 0.776 kb on + strand, within GFF3814at 0.794 kb on + strand, within GFF3814at 0.794 kb on + strand, within GFF3814at 0.794 kb on + strand, within GFF3814at 0.795 kb on - strand, within GFF3814at 0.795 kb on - strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.971 kb on + strand, within GFF3814at 0.971 kb on + strand, within GFF3814at 1.223 kb on + strand, within GFF3814at 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.470 kb on + strand, within GFF3815at 1.470 kb on + strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.552 kb on - strand, within GFF3815at 1.552 kb on - strand, within GFF3815at 1.563 kb on + strand, within GFF3815at 1.591 kb on - strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.780 kb on - strand, within GFF3815at 1.780 kb on - strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 2.034 kb on + strand, within GFF3815at 2.034 kb on + strand, within GFF3815at 2.035 kb on - strand, within GFF3815at 2.035 kb on - strand, within GFF3815at 2.035 kb on - strand, within GFF3815at 2.206 kb on - strandat 2.253 kb on - strandat 2.253 kb on - strandat 2.253 kb on - strandat 2.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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75 + +0.7
75 + +0.1
75 + -0.6
75 + +0.1
132 + -0.2
132 + -0.2
132 + -0.5
132 + -0.2
132 + +0.5
132 + -0.5
132 + +0.5
133 - +0.5
133 - +0.2
133 - +0.1
133 - +0.5
133 - -0.4
133 - -0.5
133 - +0.8
133 - -0.3
172 + -0.0
172 + +1.1
172 + -0.2
172 + -0.0
173 - +0.7
243 - -0.1
252 + -0.1
253 - -0.5
398 + GFF3814 0.14 -0.2
470 + GFF3814 0.21 +0.1
470 + GFF3814 0.21 -0.7
471 - GFF3814 0.21 -0.7
471 - GFF3814 0.21 -1.2
471 - GFF3814 0.21 -0.7
471 - GFF3814 0.21 -0.0
471 - GFF3814 0.21 +0.4
471 - GFF3814 0.21 +0.3
566 + GFF3814 0.29 -0.3
566 + GFF3814 0.29 -1.3
566 + GFF3814 0.29 -1.2
566 + GFF3814 0.29 +0.1
566 + GFF3814 0.29 -1.2
567 - GFF3814 0.29 +0.9
567 - GFF3814 0.29 -1.5
567 - GFF3814 0.29 -0.5
567 - GFF3814 0.29 -0.4
567 - GFF3814 0.29 +0.3
569 + GFF3814 0.29 -0.0
570 - GFF3814 0.29 -0.6
570 - GFF3814 0.29 -1.8
570 - GFF3814 0.29 +0.6
570 - GFF3814 0.29 +0.1
570 - GFF3814 0.29 -0.2
600 - GFF3814 0.32 -1.4
600 - GFF3814 0.32 -0.2
600 - GFF3814 0.32 -1.0
617 + GFF3814 0.34 +0.9
617 + GFF3814 0.34 -0.5
617 + GFF3814 0.34 +0.9
617 + GFF3814 0.34 +0.2
618 - GFF3814 0.34 +0.0
650 + GFF3814 0.36 +0.4
650 + GFF3814 0.36 -1.1
650 + GFF3814 0.36 -0.2
650 + GFF3814 0.36 -0.2
650 + GFF3814 0.36 -0.7
650 + GFF3814 0.36 +1.5
650 + GFF3814 0.36 -0.7
650 + GFF3814 0.36 -0.5
650 + GFF3814 0.36 -0.3
651 - GFF3814 0.37 +0.6
651 - GFF3814 0.37 -0.4
651 - GFF3814 0.37 -0.6
651 - GFF3814 0.37 -0.3
651 - GFF3814 0.37 +1.5
651 - GFF3814 0.37 -0.4
651 - GFF3814 0.37 -0.5
651 - GFF3814 0.37 -0.2
776 + GFF3814 0.48 -0.3
776 + GFF3814 0.48 +1.5
776 + GFF3814 0.48 -0.2
794 + GFF3814 0.49 +0.5
794 + GFF3814 0.49 -0.5
794 + GFF3814 0.49 -0.1
795 - GFF3814 0.49 -0.3
795 - GFF3814 0.49 +0.5
842 + GFF3814 0.53 -0.2
842 + GFF3814 0.53 -1.0
842 + GFF3814 0.53 +0.3
842 + GFF3814 0.53 -0.1
842 + GFF3814 0.53 -0.9
842 + GFF3814 0.53 -0.8
842 + GFF3814 0.53 +0.2
842 + GFF3814 0.53 -0.3
842 + GFF3814 0.53 -0.2
842 + GFF3814 0.53 +0.3
842 + GFF3814 0.53 -0.1
843 - GFF3814 0.53 -0.7
843 - GFF3814 0.53 +0.1
843 - GFF3814 0.53 -0.5
843 - GFF3814 0.53 -0.4
843 - GFF3814 0.53 -1.3
843 - GFF3814 0.53 -0.8
843 - GFF3814 0.53 -0.7
843 - GFF3814 0.53 +0.3
843 - GFF3814 0.53 -0.8
843 - GFF3814 0.53 -0.4
843 - GFF3814 0.53 -0.5
971 + GFF3814 0.65 +0.3
971 + GFF3814 0.65 -0.5
1,223 + GFF3814 0.87 +0.5
1,295 + -0.7
1,295 + -0.2
1,295 + +0.5
1,295 + -0.3
1,295 + +0.6
1,295 + -0.1
1,295 + +0.3
1,295 + -0.6
1,295 + +2.1
1,295 + +0.2
1,296 - -0.5
1,296 - -0.3
1,296 - -0.1
1,296 - -0.0
1,296 - -1.5
1,296 - +0.5
1,296 - +0.7
1,296 - +1.5
1,296 - -1.1
1,470 + GFF3815 0.10 -0.6
1,470 + GFF3815 0.10 +0.3
1,471 - GFF3815 0.10 -0.8
1,471 - GFF3815 0.10 -0.2
1,471 - GFF3815 0.10 -0.8
1,471 - GFF3815 0.10 +0.9
1,471 - GFF3815 0.10 -1.1
1,471 - GFF3815 0.10 -0.6
1,508 + GFF3815 0.15 -0.7
1,508 + GFF3815 0.15 -0.4
1,508 + GFF3815 0.15 +0.2
1,508 + GFF3815 0.15 -0.1
1,508 + GFF3815 0.15 +0.5
1,508 + GFF3815 0.15 -1.0
1,509 - GFF3815 0.15 -0.7
1,509 - GFF3815 0.15 -0.1
1,509 - GFF3815 0.15 -0.1
1,509 - GFF3815 0.15 -0.7
1,509 - GFF3815 0.15 +1.0
1,509 - GFF3815 0.15 +0.2
1,551 + GFF3815 0.21 +0.5
1,551 + GFF3815 0.21 +1.1
1,551 + GFF3815 0.21 -1.5
1,551 + GFF3815 0.21 -0.2
1,552 - GFF3815 0.21 -0.9
1,552 - GFF3815 0.21 -1.7
1,563 + GFF3815 0.22 -0.2
1,591 - GFF3815 0.26 +1.1
1,779 + GFF3815 0.50 -0.7
1,779 + GFF3815 0.50 +0.3
1,779 + GFF3815 0.50 -0.5
1,779 + GFF3815 0.50 -0.4
1,780 - GFF3815 0.50 -1.4
1,780 - GFF3815 0.50 -0.3
1,803 + GFF3815 0.53 +0.6
1,803 + GFF3815 0.53 -0.9
1,803 + GFF3815 0.53 -0.0
1,803 + GFF3815 0.53 -1.0
2,034 + GFF3815 0.83 -0.6
2,034 + GFF3815 0.83 +0.9
2,035 - GFF3815 0.83 -0.1
2,035 - GFF3815 0.83 +0.3
2,035 - GFF3815 0.83 -0.3
2,206 - -0.2
2,253 - +0.5
2,253 - +0.7
2,253 - -0.5
2,253 - -0.4

Or see this region's nucleotide sequence