Strain Fitness in Variovorax sp. SCN45 around GFF3798

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3797 and GFF3798 are separated by 69 nucleotidesGFF3798 and GFF3799 are separated by 82 nucleotides GFF3797 - Ammonia monooxygenase, at 297,412 to 298,515 GFF3797 GFF3798 - FIG00932573: hypothetical protein, at 298,585 to 298,896 GFF3798 GFF3799 - Putative PROLIN-rich signal peptide protein, at 298,979 to 300,211 GFF3799 Position (kb) 298 299Strain fitness (log2 ratio) -2 -1 0 1 2at 297.664 kb on + strand, within GFF3797at 297.664 kb on + strand, within GFF3797at 297.664 kb on + strand, within GFF3797at 297.664 kb on + strand, within GFF3797at 297.664 kb on + strand, within GFF3797at 297.664 kb on + strand, within GFF3797at 297.664 kb on + strand, within GFF3797at 297.664 kb on + strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.665 kb on - strand, within GFF3797at 297.829 kb on + strand, within GFF3797at 297.830 kb on - strand, within GFF3797at 297.830 kb on - strand, within GFF3797at 297.830 kb on - strand, within GFF3797at 297.986 kb on + strand, within GFF3797at 297.987 kb on - strand, within GFF3797at 298.501 kb on + strandat 298.501 kb on + strandat 298.501 kb on + strandat 298.501 kb on + strandat 298.502 kb on - strandat 298.502 kb on - strandat 298.502 kb on - strandat 298.502 kb on - strandat 298.502 kb on - strandat 298.502 kb on - strandat 298.622 kb on + strand, within GFF3798at 298.622 kb on + strand, within GFF3798at 298.623 kb on - strand, within GFF3798at 298.721 kb on + strand, within GFF3798at 298.721 kb on + strand, within GFF3798at 298.721 kb on + strand, within GFF3798at 298.721 kb on + strand, within GFF3798at 298.721 kb on + strand, within GFF3798at 298.722 kb on - strand, within GFF3798at 298.722 kb on - strand, within GFF3798at 298.722 kb on - strand, within GFF3798at 298.722 kb on - strand, within GFF3798at 298.722 kb on - strand, within GFF3798at 298.722 kb on - strand, within GFF3798at 298.722 kb on - strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.850 kb on + strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.851 kb on - strand, within GFF3798at 298.875 kb on + strandat 298.875 kb on + strandat 298.876 kb on - strandat 298.896 kb on + strandat 298.896 kb on + strandat 298.897 kb on - strandat 298.897 kb on - strandat 298.897 kb on - strandat 298.897 kb on - strandat 298.903 kb on + strandat 298.903 kb on + strandat 298.903 kb on + strandat 298.903 kb on + strandat 298.903 kb on + strandat 298.903 kb on + strandat 298.903 kb on + strandat 298.903 kb on + strandat 298.904 kb on - strandat 298.904 kb on - strandat 298.904 kb on - strandat 298.904 kb on - strandat 298.904 kb on - strandat 298.904 kb on - strandat 298.904 kb on - strandat 298.907 kb on + strandat 298.907 kb on + strandat 298.907 kb on + strandat 298.908 kb on - strandat 298.908 kb on - strandat 298.908 kb on - strandat 298.908 kb on - strandat 298.908 kb on - strandat 298.908 kb on - strandat 298.908 kb on - strandat 298.950 kb on + strandat 298.950 kb on + strandat 298.950 kb on + strandat 298.951 kb on - strandat 298.951 kb on - strandat 298.951 kb on - strandat 298.951 kb on - strandat 299.070 kb on + strandat 299.070 kb on + strandat 299.070 kb on + strandat 299.070 kb on + strandat 299.070 kb on + strandat 299.070 kb on + strandat 299.070 kb on + strandat 299.071 kb on - strandat 299.071 kb on - strandat 299.071 kb on - strandat 299.071 kb on - strandat 299.071 kb on - strandat 299.071 kb on - strandat 299.076 kb on + strandat 299.076 kb on + strandat 299.076 kb on + strandat 299.076 kb on + strandat 299.076 kb on + strandat 299.076 kb on + strandat 299.076 kb on + strandat 299.077 kb on - strandat 299.077 kb on - strandat 299.077 kb on - strandat 299.077 kb on - strandat 299.152 kb on - strand, within GFF3799at 299.260 kb on - strand, within GFF3799at 299.291 kb on + strand, within GFF3799at 299.291 kb on + strand, within GFF3799at 299.292 kb on - strand, within GFF3799at 299.424 kb on + strand, within GFF3799at 299.425 kb on - strand, within GFF3799at 299.521 kb on - strand, within GFF3799at 299.521 kb on - strand, within GFF3799at 299.521 kb on - strand, within GFF3799at 299.626 kb on + strand, within GFF3799at 299.626 kb on + strand, within GFF3799at 299.627 kb on - strand, within GFF3799at 299.627 kb on - strand, within GFF3799

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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297,664 + GFF3797 0.23 -1.0
297,664 + GFF3797 0.23 +0.7
297,664 + GFF3797 0.23 -0.2
297,664 + GFF3797 0.23 -0.2
297,664 + GFF3797 0.23 -2.2
297,664 + GFF3797 0.23 +0.2
297,664 + GFF3797 0.23 -0.2
297,664 + GFF3797 0.23 +1.7
297,665 - GFF3797 0.23 +0.5
297,665 - GFF3797 0.23 -0.2
297,665 - GFF3797 0.23 +0.1
297,665 - GFF3797 0.23 +0.9
297,665 - GFF3797 0.23 +0.7
297,665 - GFF3797 0.23 -0.3
297,665 - GFF3797 0.23 +0.3
297,665 - GFF3797 0.23 -0.6
297,665 - GFF3797 0.23 +0.1
297,665 - GFF3797 0.23 +0.5
297,829 + GFF3797 0.38 +0.4
297,830 - GFF3797 0.38 +0.1
297,830 - GFF3797 0.38 -0.0
297,830 - GFF3797 0.38 +0.0
297,986 + GFF3797 0.52 -0.9
297,987 - GFF3797 0.52 -0.2
298,501 + +1.5
298,501 + -0.9
298,501 + -0.2
298,501 + +1.0
298,502 - +0.4
298,502 - +0.6
298,502 - +0.9
298,502 - -0.0
298,502 - -0.2
298,502 - -0.4
298,622 + GFF3798 0.12 +0.4
298,622 + GFF3798 0.12 +0.3
298,623 - GFF3798 0.12 -0.7
298,721 + GFF3798 0.44 -0.3
298,721 + GFF3798 0.44 +0.3
298,721 + GFF3798 0.44 +0.1
298,721 + GFF3798 0.44 -0.4
298,721 + GFF3798 0.44 +0.1
298,722 - GFF3798 0.44 +0.6
298,722 - GFF3798 0.44 -0.0
298,722 - GFF3798 0.44 +0.7
298,722 - GFF3798 0.44 -0.0
298,722 - GFF3798 0.44 -0.1
298,722 - GFF3798 0.44 -0.3
298,722 - GFF3798 0.44 -0.0
298,850 + GFF3798 0.85 +1.1
298,850 + GFF3798 0.85 +0.6
298,850 + GFF3798 0.85 -0.2
298,850 + GFF3798 0.85 -0.1
298,850 + GFF3798 0.85 +0.1
298,850 + GFF3798 0.85 -0.5
298,850 + GFF3798 0.85 +0.4
298,850 + GFF3798 0.85 -0.1
298,850 + GFF3798 0.85 +1.7
298,850 + GFF3798 0.85 -0.6
298,850 + GFF3798 0.85 -1.9
298,851 - GFF3798 0.85 -0.3
298,851 - GFF3798 0.85 -0.1
298,851 - GFF3798 0.85 +0.2
298,851 - GFF3798 0.85 -0.1
298,851 - GFF3798 0.85 -0.4
298,851 - GFF3798 0.85 +0.1
298,851 - GFF3798 0.85 -0.3
298,851 - GFF3798 0.85 +0.1
298,851 - GFF3798 0.85 +0.8
298,851 - GFF3798 0.85 +0.1
298,851 - GFF3798 0.85 +1.4
298,851 - GFF3798 0.85 +1.0
298,851 - GFF3798 0.85 -0.3
298,875 + -0.2
298,875 + +0.1
298,876 - -0.2
298,896 + -2.1
298,896 + -0.3
298,897 - +0.1
298,897 - -2.2
298,897 - -0.3
298,897 - -0.8
298,903 + -0.3
298,903 + -0.8
298,903 + -0.7
298,903 + +2.7
298,903 + -0.6
298,903 + -2.2
298,903 + -0.2
298,903 + -0.5
298,904 - -0.3
298,904 - +0.3
298,904 - +0.1
298,904 - -0.2
298,904 - +0.1
298,904 - -0.8
298,904 - +0.1
298,907 + +1.1
298,907 + -0.7
298,907 + +0.2
298,908 - -0.5
298,908 - -0.4
298,908 - +0.1
298,908 - -0.3
298,908 - -0.3
298,908 - -0.2
298,908 - -0.5
298,950 + +0.0
298,950 + +0.8
298,950 + -1.0
298,951 - +0.0
298,951 - -0.8
298,951 - -0.6
298,951 - -0.6
299,070 + +1.2
299,070 + +0.7
299,070 + +2.3
299,070 + +0.4
299,070 + -0.7
299,070 + +0.2
299,070 + +0.1
299,071 - -0.0
299,071 - +0.8
299,071 - -0.1
299,071 - -0.9
299,071 - -0.7
299,071 - +0.9
299,076 + -0.5
299,076 + +0.1
299,076 + +0.7
299,076 + +0.3
299,076 + +0.7
299,076 + +0.0
299,076 + -0.3
299,077 - -0.7
299,077 - -0.9
299,077 - +0.7
299,077 - -0.5
299,152 - GFF3799 0.14 -0.2
299,260 - GFF3799 0.23 -0.7
299,291 + GFF3799 0.25 +1.2
299,291 + GFF3799 0.25 -1.1
299,292 - GFF3799 0.25 +0.3
299,424 + GFF3799 0.36 +0.3
299,425 - GFF3799 0.36 -0.2
299,521 - GFF3799 0.44 -0.6
299,521 - GFF3799 0.44 +0.1
299,521 - GFF3799 0.44 -0.8
299,626 + GFF3799 0.52 -0.4
299,626 + GFF3799 0.52 -0.3
299,627 - GFF3799 0.53 -1.2
299,627 - GFF3799 0.53 -0.5

Or see this region's nucleotide sequence