Strain Fitness in Variovorax sp. SCN45 around GFF3537

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3536 and GFF3537 are separated by 100 nucleotidesGFF3537 and GFF3538 are separated by 60 nucleotides GFF3536 - Alcohol dehydrogenase (EC 1.1.1.1), at 42,084 to 43,094 GFF3536 GFF3537 - Transcriptional regulator, LysR family, at 43,195 to 44,115 GFF3537 GFF3538 - Ferric iron ABC transporter, iron-binding protein, at 44,176 to 45,210 GFF3538 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.958 kb on + strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 43.131 kb on + strandat 43.173 kb on + strandat 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.777 kb on + strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.796 kb on + strand, within GFF3537at 44.280 kb on + strand, within GFF3538at 44.280 kb on + strand, within GFF3538at 44.280 kb on + strand, within GFF3538at 44.415 kb on + strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.479 kb on + strand, within GFF3538at 44.491 kb on + strand, within GFF3538at 44.491 kb on + strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.506 kb on + strand, within GFF3538at 44.506 kb on + strand, within GFF3538at 44.507 kb on - strand, within GFF3538at 44.507 kb on - strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.528 kb on - strand, within GFF3538at 44.528 kb on - strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.657 kb on - strand, within GFF3538at 44.657 kb on - strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.759 kb on - strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.792 kb on - strand, within GFF3538at 44.792 kb on - strand, within GFF3538at 44.884 kb on + strand, within GFF3538at 44.884 kb on + strand, within GFF3538at 44.933 kb on - strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.993 kb on - strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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42,280 + GFF3536 0.19 -0.1
42,280 + GFF3536 0.19 -0.6
42,280 + GFF3536 0.19 -0.3
42,280 + GFF3536 0.19 -1.6
42,280 + GFF3536 0.19 +0.4
42,280 + GFF3536 0.19 +0.1
42,281 - GFF3536 0.19 +1.0
42,281 - GFF3536 0.19 +0.2
42,281 - GFF3536 0.19 -0.6
42,281 - GFF3536 0.19 +0.5
42,281 - GFF3536 0.19 -0.6
42,281 - GFF3536 0.19 -0.6
42,281 - GFF3536 0.19 -0.7
42,958 + GFF3536 0.86 -0.3
42,959 - GFF3536 0.87 +0.3
42,959 - GFF3536 0.87 +1.7
42,959 - GFF3536 0.87 -0.4
42,959 - GFF3536 0.87 -0.5
43,131 + +0.5
43,173 + -1.1
43,390 + GFF3537 0.21 -1.0
43,390 + GFF3537 0.21 -0.7
43,390 + GFF3537 0.21 -0.3
43,391 - GFF3537 0.21 -0.6
43,391 - GFF3537 0.21 -0.4
43,393 + GFF3537 0.21 -0.7
43,393 + GFF3537 0.21 -1.3
43,394 - GFF3537 0.22 +0.3
43,394 - GFF3537 0.22 -1.7
43,394 - GFF3537 0.22 -0.6
43,394 - GFF3537 0.22 +0.1
43,711 + GFF3537 0.56 -0.9
43,711 + GFF3537 0.56 -0.9
43,711 + GFF3537 0.56 -0.1
43,711 + GFF3537 0.56 -0.1
43,712 - GFF3537 0.56 +0.0
43,712 - GFF3537 0.56 -0.1
43,777 + GFF3537 0.63 -0.9
43,778 - GFF3537 0.63 -0.0
43,778 - GFF3537 0.63 -0.2
43,778 - GFF3537 0.63 +0.2
43,796 + GFF3537 0.65 -0.7
44,280 + GFF3538 0.10 -0.7
44,280 + GFF3538 0.10 +0.1
44,280 + GFF3538 0.10 -0.8
44,415 + GFF3538 0.23 -0.0
44,416 - GFF3538 0.23 +0.1
44,416 - GFF3538 0.23 -1.5
44,416 - GFF3538 0.23 -0.6
44,479 + GFF3538 0.29 -0.6
44,491 + GFF3538 0.30 +0.5
44,491 + GFF3538 0.30 -0.3
44,492 - GFF3538 0.31 +2.7
44,492 - GFF3538 0.31 -0.2
44,492 - GFF3538 0.31 -0.5
44,506 + GFF3538 0.32 -0.2
44,506 + GFF3538 0.32 +0.5
44,507 - GFF3538 0.32 -0.4
44,507 - GFF3538 0.32 +1.0
44,527 + GFF3538 0.34 -2.7
44,527 + GFF3538 0.34 +0.1
44,527 + GFF3538 0.34 -0.1
44,527 + GFF3538 0.34 -1.7
44,527 + GFF3538 0.34 -3.1
44,528 - GFF3538 0.34 -0.1
44,528 - GFF3538 0.34 -0.6
44,560 + GFF3538 0.37 -0.2
44,560 + GFF3538 0.37 -0.7
44,560 + GFF3538 0.37 -0.9
44,560 + GFF3538 0.37 +0.4
44,560 + GFF3538 0.37 -1.3
44,560 + GFF3538 0.37 -0.3
44,560 + GFF3538 0.37 +0.2
44,560 + GFF3538 0.37 -0.0
44,560 + GFF3538 0.37 -1.7
44,560 + GFF3538 0.37 +0.4
44,561 - GFF3538 0.37 +0.4
44,561 - GFF3538 0.37 +0.6
44,561 - GFF3538 0.37 -0.6
44,561 - GFF3538 0.37 -0.2
44,561 - GFF3538 0.37 -1.3
44,561 - GFF3538 0.37 -0.2
44,561 - GFF3538 0.37 -0.6
44,561 - GFF3538 0.37 -1.3
44,656 + GFF3538 0.46 -0.5
44,656 + GFF3538 0.46 +0.5
44,656 + GFF3538 0.46 +0.4
44,657 - GFF3538 0.46 +0.3
44,657 - GFF3538 0.46 -0.8
44,704 + GFF3538 0.51 +0.1
44,704 + GFF3538 0.51 -0.3
44,704 + GFF3538 0.51 -0.9
44,704 + GFF3538 0.51 -0.9
44,704 + GFF3538 0.51 -0.6
44,705 - GFF3538 0.51 -0.1
44,705 - GFF3538 0.51 +0.1
44,705 - GFF3538 0.51 -0.4
44,705 - GFF3538 0.51 +0.5
44,758 + GFF3538 0.56 -1.0
44,758 + GFF3538 0.56 +1.0
44,758 + GFF3538 0.56 -0.1
44,759 - GFF3538 0.56 -1.5
44,791 + GFF3538 0.59 -0.1
44,791 + GFF3538 0.59 -0.1
44,791 + GFF3538 0.59 -0.2
44,791 + GFF3538 0.59 -0.6
44,791 + GFF3538 0.59 -0.2
44,792 - GFF3538 0.60 +0.2
44,792 - GFF3538 0.60 +1.7
44,884 + GFF3538 0.68 +1.1
44,884 + GFF3538 0.68 +0.1
44,933 - GFF3538 0.73 +0.9
44,992 + GFF3538 0.79 -0.2
44,992 + GFF3538 0.79 -0.4
44,993 - GFF3538 0.79 -0.4
44,995 + GFF3538 0.79 +0.1
44,995 + GFF3538 0.79 +1.5
44,995 + GFF3538 0.79 -0.4
44,995 + GFF3538 0.79 -1.0
44,996 - GFF3538 0.79 +1.3
44,996 - GFF3538 0.79 +0.2
44,996 - GFF3538 0.79 +0.5
44,996 - GFF3538 0.79 +0.1
44,996 - GFF3538 0.79 +2.3
44,996 - GFF3538 0.79 +1.1
44,996 - GFF3538 0.79 -0.8

Or see this region's nucleotide sequence