Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3438 and GFF3439 are separated by 7 nucleotides GFF3439 and GFF3440 are separated by 60 nucleotides GFF3440 and GFF3441 are separated by 5 nucleotides
GFF3438 - Amidohydrolase family protein, at 261,053 to 262,222
GFF3438
GFF3439 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 262,230 to 263,612
GFF3439
GFF3440 - FIG00460300: hypothetical protein, at 263,673 to 264,503
GFF3440
GFF3441 - Hypothetical protein VC0266 (sugar utilization related?), at 264,509 to 265,087
GFF3441
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.466 kb on - strand, within GFF3438 at 261.778 kb on + strand, within GFF3438 at 262.085 kb on + strand, within GFF3438 at 262.085 kb on + strand, within GFF3438 at 262.086 kb on - strand, within GFF3438 at 262.139 kb on + strand at 262.139 kb on + strand at 262.142 kb on + strand at 262.143 kb on - strand at 262.181 kb on + strand at 262.251 kb on + strand at 262.251 kb on + strand at 262.659 kb on + strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.143 kb on - strand, within GFF3439 at 263.143 kb on - strand, within GFF3439 at 263.145 kb on + strand, within GFF3439 at 263.146 kb on - strand, within GFF3439 at 263.223 kb on + strand, within GFF3439 at 263.223 kb on + strand, within GFF3439 at 263.223 kb on + strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.500 kb on - strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.563 kb on - strand at 263.563 kb on - strand at 263.563 kb on - strand at 263.647 kb on + strand at 263.648 kb on - strand at 263.648 kb on - strand at 263.838 kb on + strand, within GFF3440 at 263.839 kb on - strand, within GFF3440 at 263.865 kb on + strand, within GFF3440 at 263.865 kb on + strand, within GFF3440 at 263.865 kb on + strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 264.192 kb on + strand, within GFF3440 at 264.192 kb on + strand, within GFF3440 at 264.193 kb on - strand, within GFF3440 at 264.219 kb on + strand, within GFF3440 at 264.219 kb on + strand, within GFF3440 at 264.220 kb on - strand, within GFF3440
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 261,466 - GFF3438 0.35 -0.2 261,778 + GFF3438 0.62 +0.1 262,085 + GFF3438 0.88 +0.5 262,085 + GFF3438 0.88 +0.1 262,086 - GFF3438 0.88 +0.2 262,139 + +1.0 262,139 + -0.3 262,142 + +0.0 262,143 - +0.6 262,181 + +0.3 262,251 + -0.6 262,251 + +0.8 262,659 + GFF3439 0.31 -0.2 262,660 - GFF3439 0.31 -0.6 262,660 - GFF3439 0.31 +0.1 262,660 - GFF3439 0.31 -0.8 263,142 + GFF3439 0.66 +0.1 263,142 + GFF3439 0.66 -0.1 263,142 + GFF3439 0.66 -0.4 263,143 - GFF3439 0.66 -0.9 263,143 - GFF3439 0.66 +0.1 263,145 + GFF3439 0.66 -1.9 263,146 - GFF3439 0.66 -0.3 263,223 + GFF3439 0.72 +0.8 263,223 + GFF3439 0.72 -0.5 263,223 + GFF3439 0.72 -0.6 263,224 - GFF3439 0.72 +0.4 263,224 - GFF3439 0.72 -0.3 263,224 - GFF3439 0.72 -1.6 263,224 - GFF3439 0.72 +1.5 263,224 - GFF3439 0.72 -0.8 263,224 - GFF3439 0.72 -1.8 263,499 + +0.1 263,499 + +0.1 263,499 + +1.8 263,499 + -0.4 263,499 + +2.0 263,499 + -0.5 263,500 - -1.2 263,562 + -0.8 263,562 + -0.1 263,562 + -0.7 263,562 + -0.3 263,562 + +0.5 263,562 + +0.1 263,563 - -0.1 263,563 - +0.2 263,563 - +0.5 263,647 + -0.4 263,648 - -0.1 263,648 - +0.2 263,838 + GFF3440 0.20 +0.2 263,839 - GFF3440 0.20 -1.7 263,865 + GFF3440 0.23 +0.4 263,865 + GFF3440 0.23 -0.2 263,865 + GFF3440 0.23 +0.5 263,866 - GFF3440 0.23 -0.0 263,866 - GFF3440 0.23 +1.8 263,866 - GFF3440 0.23 -0.2 263,866 - GFF3440 0.23 -1.1 263,866 - GFF3440 0.23 -0.8 263,866 - GFF3440 0.23 -0.4 264,192 + GFF3440 0.62 -0.3 264,192 + GFF3440 0.62 +1.0 264,193 - GFF3440 0.63 -0.3 264,219 + GFF3440 0.66 -0.0 264,219 + GFF3440 0.66 -0.9 264,220 - GFF3440 0.66 -0.4
Or see this region's nucleotide sequence