Strain Fitness in Variovorax sp. SCN45 around GFF3414

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3413 and GFF3414 are separated by 212 nucleotidesGFF3414 and GFF3415 are separated by 10 nucleotidesGFF3415 and GFF3416 are separated by 41 nucleotides GFF3413 - Thioredoxin reductase (EC 1.8.1.9), at 236,884 to 237,786 GFF3413 GFF3414 - Fumarylacetoacetase (EC 3.7.1.2), at 237,999 to 239,324 GFF3414 GFF3415 - Cyclase, at 239,335 to 240,141 GFF3415 GFF3416 - Alkanesulfonates transport system permease protein, at 240,183 to 240,962 GFF3416 Position (kb) 237 238 239 240Strain fitness (log2 ratio) -2 -1 0 1at 237.208 kb on + strand, within GFF3413at 237.209 kb on - strand, within GFF3413at 237.283 kb on + strand, within GFF3413at 237.283 kb on + strand, within GFF3413at 237.283 kb on + strand, within GFF3413at 237.284 kb on - strand, within GFF3413at 237.295 kb on + strand, within GFF3413at 237.295 kb on + strand, within GFF3413at 237.296 kb on - strand, within GFF3413at 237.680 kb on - strand, within GFF3413at 237.832 kb on + strandat 237.832 kb on + strandat 237.833 kb on - strandat 237.834 kb on + strandat 237.835 kb on - strandat 237.932 kb on - strandat 238.086 kb on + strandat 238.087 kb on - strandat 238.289 kb on - strand, within GFF3414at 238.420 kb on + strand, within GFF3414at 238.420 kb on + strand, within GFF3414at 238.421 kb on - strand, within GFF3414at 238.690 kb on + strand, within GFF3414at 238.690 kb on + strand, within GFF3414at 238.690 kb on + strand, within GFF3414at 238.691 kb on - strand, within GFF3414at 238.691 kb on - strand, within GFF3414at 238.714 kb on + strand, within GFF3414at 238.715 kb on - strand, within GFF3414at 238.715 kb on - strand, within GFF3414at 238.715 kb on - strand, within GFF3414at 238.807 kb on + strand, within GFF3414at 238.808 kb on - strand, within GFF3414at 238.897 kb on + strand, within GFF3414at 238.897 kb on + strand, within GFF3414at 238.897 kb on + strand, within GFF3414at 238.897 kb on + strand, within GFF3414at 238.898 kb on - strand, within GFF3414at 238.898 kb on - strand, within GFF3414at 238.898 kb on - strand, within GFF3414at 238.910 kb on - strand, within GFF3414at 238.910 kb on - strand, within GFF3414at 238.936 kb on + strand, within GFF3414at 238.937 kb on - strand, within GFF3414at 239.627 kb on + strand, within GFF3415at 239.627 kb on + strand, within GFF3415at 239.627 kb on + strand, within GFF3415at 239.627 kb on + strand, within GFF3415at 239.627 kb on + strand, within GFF3415at 239.627 kb on + strand, within GFF3415at 239.627 kb on + strand, within GFF3415at 239.628 kb on - strand, within GFF3415at 239.628 kb on - strand, within GFF3415at 239.628 kb on - strand, within GFF3415at 239.628 kb on - strand, within GFF3415at 239.628 kb on - strand, within GFF3415at 239.628 kb on - strand, within GFF3415at 239.642 kb on + strand, within GFF3415at 239.642 kb on + strand, within GFF3415at 239.642 kb on + strand, within GFF3415at 239.669 kb on + strand, within GFF3415at 239.669 kb on + strand, within GFF3415at 239.670 kb on - strand, within GFF3415at 239.670 kb on - strand, within GFF3415at 239.670 kb on - strand, within GFF3415at 239.685 kb on - strand, within GFF3415at 239.786 kb on + strand, within GFF3415at 239.787 kb on - strand, within GFF3415at 239.787 kb on - strand, within GFF3415at 239.915 kb on + strand, within GFF3415at 239.916 kb on - strand, within GFF3415at 240.035 kb on + strand, within GFF3415at 240.035 kb on + strand, within GFF3415at 240.035 kb on + strand, within GFF3415at 240.035 kb on + strand, within GFF3415at 240.035 kb on + strand, within GFF3415at 240.036 kb on - strand, within GFF3415at 240.036 kb on - strand, within GFF3415at 240.056 kb on + strand, within GFF3415

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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237,208 + GFF3413 0.36 +0.8
237,209 - GFF3413 0.36 -0.3
237,283 + GFF3413 0.44 +0.3
237,283 + GFF3413 0.44 +0.8
237,283 + GFF3413 0.44 -0.5
237,284 - GFF3413 0.44 -0.4
237,295 + GFF3413 0.46 -0.2
237,295 + GFF3413 0.46 -0.2
237,296 - GFF3413 0.46 +0.7
237,680 - GFF3413 0.88 +0.3
237,832 + -0.8
237,832 + +0.4
237,833 - +0.4
237,834 + -0.9
237,835 - +0.8
237,932 - +0.5
238,086 + -0.6
238,087 - -0.6
238,289 - GFF3414 0.22 -1.7
238,420 + GFF3414 0.32 -0.1
238,420 + GFF3414 0.32 +0.5
238,421 - GFF3414 0.32 -2.5
238,690 + GFF3414 0.52 -0.0
238,690 + GFF3414 0.52 -0.7
238,690 + GFF3414 0.52 -0.9
238,691 - GFF3414 0.52 +0.1
238,691 - GFF3414 0.52 -0.8
238,714 + GFF3414 0.54 -0.2
238,715 - GFF3414 0.54 +0.4
238,715 - GFF3414 0.54 -1.1
238,715 - GFF3414 0.54 -0.3
238,807 + GFF3414 0.61 -0.3
238,808 - GFF3414 0.61 +0.8
238,897 + GFF3414 0.68 -0.1
238,897 + GFF3414 0.68 -0.7
238,897 + GFF3414 0.68 +0.3
238,897 + GFF3414 0.68 -0.6
238,898 - GFF3414 0.68 +0.3
238,898 - GFF3414 0.68 -0.9
238,898 - GFF3414 0.68 -0.2
238,910 - GFF3414 0.69 -0.6
238,910 - GFF3414 0.69 +0.3
238,936 + GFF3414 0.71 -2.5
238,937 - GFF3414 0.71 +0.1
239,627 + GFF3415 0.36 -0.4
239,627 + GFF3415 0.36 +0.1
239,627 + GFF3415 0.36 -0.1
239,627 + GFF3415 0.36 +0.5
239,627 + GFF3415 0.36 -0.1
239,627 + GFF3415 0.36 -0.1
239,627 + GFF3415 0.36 -0.6
239,628 - GFF3415 0.36 -0.4
239,628 - GFF3415 0.36 +0.3
239,628 - GFF3415 0.36 -0.1
239,628 - GFF3415 0.36 -0.3
239,628 - GFF3415 0.36 +0.9
239,628 - GFF3415 0.36 -0.4
239,642 + GFF3415 0.38 -0.9
239,642 + GFF3415 0.38 -0.6
239,642 + GFF3415 0.38 -0.8
239,669 + GFF3415 0.41 +0.0
239,669 + GFF3415 0.41 +0.5
239,670 - GFF3415 0.42 +0.4
239,670 - GFF3415 0.42 -0.5
239,670 - GFF3415 0.42 -2.3
239,685 - GFF3415 0.43 +0.6
239,786 + GFF3415 0.56 +0.3
239,787 - GFF3415 0.56 +0.0
239,787 - GFF3415 0.56 +0.0
239,915 + GFF3415 0.72 -0.1
239,916 - GFF3415 0.72 +0.2
240,035 + GFF3415 0.87 +0.4
240,035 + GFF3415 0.87 -0.5
240,035 + GFF3415 0.87 +1.2
240,035 + GFF3415 0.87 -0.8
240,035 + GFF3415 0.87 -0.4
240,036 - GFF3415 0.87 -0.8
240,036 - GFF3415 0.87 +0.0
240,056 + GFF3415 0.89 +0.4

Or see this region's nucleotide sequence