Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3108 and GFF3109 are separated by 115 nucleotides GFF3109 and GFF3110 overlap by 4 nucleotides
GFF3108 - Transcriptional regulator, LysR family, at 535,346 to 536,350
GFF3108
GFF3109 - Methionine ABC transporter substrate-binding protein, at 536,466 to 537,299
GFF3109
GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645
GFF3110
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.887 kb on - strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.189 kb on + strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.270 kb on + strand at 536.270 kb on + strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.273 kb on + strand at 536.273 kb on + strand at 536.274 kb on - strand at 536.274 kb on - strand at 536.274 kb on - strand at 536.366 kb on + strand at 536.367 kb on - strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.427 kb on - strand at 536.427 kb on - strand at 536.427 kb on - strand at 536.585 kb on + strand, within GFF3109 at 536.586 kb on - strand, within GFF3109 at 536.586 kb on - strand, within GFF3109 at 536.599 kb on - strand, within GFF3109 at 536.649 kb on + strand, within GFF3109 at 536.661 kb on + strand, within GFF3109 at 536.661 kb on + strand, within GFF3109 at 536.661 kb on + strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.745 kb on + strand, within GFF3109 at 536.745 kb on + strand, within GFF3109 at 536.745 kb on + strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.823 kb on + strand, within GFF3109 at 536.824 kb on - strand, within GFF3109 at 536.824 kb on - strand, within GFF3109 at 537.147 kb on + strand, within GFF3109 at 537.147 kb on + strand, within GFF3109 at 537.148 kb on - strand, within GFF3109 at 537.285 kb on + strand at 537.285 kb on + strand at 537.285 kb on + strand at 537.286 kb on - strand at 537.286 kb on - strand at 537.422 kb on + strand at 537.422 kb on + strand at 537.422 kb on + strand at 537.422 kb on + strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.605 kb on + strand, within GFF3110 at 537.605 kb on + strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.617 kb on + strand, within GFF3110 at 537.617 kb on + strand, within GFF3110 at 537.617 kb on + strand, within GFF3110 at 537.618 kb on - strand, within GFF3110 at 537.618 kb on - strand, within GFF3110 at 537.618 kb on - strand, within GFF3110 at 537.753 kb on - strand, within GFF3110 at 537.874 kb on - strand, within GFF3110 at 538.046 kb on + strand, within GFF3110 at 538.046 kb on + strand, within GFF3110 at 538.046 kb on + strand, within GFF3110 at 538.047 kb on - strand, within GFF3110 at 538.196 kb on + strand, within GFF3110 at 538.196 kb on + strand, within GFF3110 at 538.197 kb on - strand, within GFF3110 at 538.197 kb on - strand, within GFF3110
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 535,887 - GFF3108 0.54 -1.1 535,970 + GFF3108 0.62 -0.6 535,970 + GFF3108 0.62 -0.3 535,970 + GFF3108 0.62 +0.1 535,970 + GFF3108 0.62 -0.1 535,970 + GFF3108 0.62 -0.0 535,970 + GFF3108 0.62 -1.2 536,174 + GFF3108 0.82 -0.4 536,174 + GFF3108 0.82 -0.3 536,174 + GFF3108 0.82 -0.2 536,174 + GFF3108 0.82 +0.1 536,174 + GFF3108 0.82 -1.6 536,174 + GFF3108 0.82 -0.2 536,174 + GFF3108 0.82 -0.3 536,174 + GFF3108 0.82 -2.2 536,175 - GFF3108 0.82 -0.1 536,175 - GFF3108 0.82 -0.2 536,175 - GFF3108 0.82 -0.2 536,189 + GFF3108 0.84 +0.1 536,190 - GFF3108 0.84 -0.6 536,190 - GFF3108 0.84 +0.7 536,190 - GFF3108 0.84 +0.2 536,270 + +1.9 536,270 + -0.3 536,271 - +0.3 536,271 - -0.9 536,271 - +0.9 536,271 - -0.9 536,273 + +0.2 536,273 + -0.3 536,274 - -0.1 536,274 - -0.3 536,274 - -1.6 536,366 + -0.4 536,367 - -0.5 536,426 + -0.6 536,426 + +1.5 536,426 + +0.2 536,426 + -0.2 536,426 + -0.3 536,427 - -0.4 536,427 - +0.5 536,427 - -0.9 536,585 + GFF3109 0.14 -0.2 536,586 - GFF3109 0.14 -0.8 536,586 - GFF3109 0.14 +0.5 536,599 - GFF3109 0.16 -0.3 536,649 + GFF3109 0.22 -1.3 536,661 + GFF3109 0.23 +0.5 536,661 + GFF3109 0.23 +0.9 536,661 + GFF3109 0.23 +0.3 536,662 - GFF3109 0.24 -0.2 536,662 - GFF3109 0.24 -0.2 536,662 - GFF3109 0.24 +0.4 536,662 - GFF3109 0.24 -0.4 536,662 - GFF3109 0.24 -2.1 536,662 - GFF3109 0.24 -0.2 536,662 - GFF3109 0.24 -1.1 536,745 + GFF3109 0.33 -0.5 536,745 + GFF3109 0.33 -1.3 536,745 + GFF3109 0.33 -0.4 536,746 - GFF3109 0.34 -0.2 536,746 - GFF3109 0.34 -0.5 536,746 - GFF3109 0.34 +0.7 536,746 - GFF3109 0.34 +0.1 536,823 + GFF3109 0.43 -0.3 536,824 - GFF3109 0.43 -1.1 536,824 - GFF3109 0.43 -0.1 537,147 + GFF3109 0.82 -0.3 537,147 + GFF3109 0.82 -0.9 537,148 - GFF3109 0.82 -0.8 537,285 + -0.3 537,285 + -0.8 537,285 + +0.4 537,286 - +0.4 537,286 - +1.5 537,422 + -0.2 537,422 + +0.7 537,422 + -0.1 537,422 + -0.1 537,423 - +1.6 537,423 - -0.6 537,423 - +0.5 537,423 - -0.3 537,423 - -1.1 537,423 - -0.1 537,605 + GFF3110 0.23 -0.7 537,605 + GFF3110 0.23 -0.9 537,606 - GFF3110 0.23 -0.2 537,606 - GFF3110 0.23 +0.6 537,606 - GFF3110 0.23 +0.2 537,606 - GFF3110 0.23 +2.5 537,606 - GFF3110 0.23 +2.5 537,606 - GFF3110 0.23 -0.2 537,606 - GFF3110 0.23 -0.2 537,606 - GFF3110 0.23 +0.0 537,617 + GFF3110 0.24 -1.3 537,617 + GFF3110 0.24 -0.0 537,617 + GFF3110 0.24 -0.6 537,618 - GFF3110 0.24 +0.3 537,618 - GFF3110 0.24 +0.0 537,618 - GFF3110 0.24 +0.8 537,753 - GFF3110 0.34 -0.5 537,874 - GFF3110 0.43 -0.7 538,046 + GFF3110 0.56 -0.0 538,046 + GFF3110 0.56 -0.2 538,046 + GFF3110 0.56 -0.1 538,047 - GFF3110 0.56 +0.1 538,196 + GFF3110 0.67 +0.4 538,196 + GFF3110 0.67 -0.5 538,197 - GFF3110 0.67 -0.9 538,197 - GFF3110 0.67 -1.1
Or see this region's nucleotide sequence