Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2879 and GFF2880 are separated by 105 nucleotides GFF2880 and GFF2881 are separated by 19 nucleotides
GFF2879 - RNA polymerase sigma factor RpoD, at 303,117 to 305,447
GFF2879
GFF2880 - Multidrug resistance transporter, Bcr/CflA family, at 305,553 to 306,788
GFF2880
GFF2881 - Putative transmembrane protein, at 306,808 to 307,935
GFF2881
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1
2 at 305.445 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.445 kb on + strand at 305.446 kb on - strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.533 kb on + strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.534 kb on - strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.652 kb on + strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.653 kb on - strand at 305.727 kb on + strand, within GFF2880 at 305.727 kb on + strand, within GFF2880 at 305.727 kb on + strand, within GFF2880 at 305.727 kb on + strand, within GFF2880 at 305.727 kb on + strand, within GFF2880 at 305.727 kb on + strand, within GFF2880 at 305.727 kb on + strand, within GFF2880 at 305.728 kb on - strand, within GFF2880 at 305.728 kb on - strand, within GFF2880 at 305.728 kb on - strand, within GFF2880 at 305.728 kb on - strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.184 kb on - strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.262 kb on - strand, within GFF2880 at 306.262 kb on - strand, within GFF2880 at 306.262 kb on - strand, within GFF2880 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 305,445 + -0.2 305,445 + -0.1 305,445 + -0.0 305,445 + +0.1 305,445 + -0.2 305,445 + -0.2 305,445 + -1.0 305,445 + +0.1 305,445 + -0.8 305,446 - +0.1 305,533 + -0.8 305,533 + -0.4 305,533 + -0.4 305,533 + +0.1 305,533 + +0.8 305,533 + +1.5 305,533 + -0.6 305,533 + -0.2 305,533 + -0.0 305,533 + -0.2 305,533 + +0.5 305,533 + +0.7 305,534 - -0.5 305,534 - +0.0 305,534 - +0.0 305,534 - -0.4 305,534 - +0.5 305,534 - -0.6 305,534 - +1.5 305,534 - -1.3 305,534 - -0.7 305,534 - +0.2 305,534 - -1.3 305,534 - -0.6 305,534 - +0.7 305,652 + +0.2 305,652 + -0.5 305,652 + -0.5 305,652 + +0.4 305,652 + -0.1 305,652 + +1.0 305,652 + -0.5 305,652 + +0.2 305,652 + -0.5 305,652 + +0.3 305,652 + -0.5 305,652 + -0.6 305,652 + -0.4 305,652 + -0.6 305,652 + -0.4 305,652 + -1.1 305,652 + +0.6 305,652 + -0.3 305,652 + -0.3 305,652 + +0.4 305,652 + +0.1 305,652 + +0.1 305,653 - +0.2 305,653 - -0.1 305,653 - +0.9 305,653 - +1.1 305,653 - -2.4 305,653 - -0.3 305,653 - +0.1 305,653 - -2.1 305,653 - -0.3 305,653 - +1.3 305,653 - -0.5 305,653 - -1.0 305,653 - -0.0 305,653 - +0.5 305,653 - -1.0 305,653 - -1.3 305,653 - -0.4 305,653 - +0.0 305,653 - -0.8 305,653 - +0.5 305,727 + GFF2880 0.14 -0.4 305,727 + GFF2880 0.14 +1.1 305,727 + GFF2880 0.14 -0.6 305,727 + GFF2880 0.14 -0.6 305,727 + GFF2880 0.14 -1.2 305,727 + GFF2880 0.14 -0.1 305,727 + GFF2880 0.14 +0.2 305,728 - GFF2880 0.14 -0.6 305,728 - GFF2880 0.14 -1.5 305,728 - GFF2880 0.14 -0.8 305,728 - GFF2880 0.14 -0.7 305,991 + GFF2880 0.35 -0.2 305,991 + GFF2880 0.35 +0.1 305,991 + GFF2880 0.35 -0.4 305,991 + GFF2880 0.35 -1.4 305,991 + GFF2880 0.35 +0.7 305,991 + GFF2880 0.35 -0.5 305,992 - GFF2880 0.36 +0.1 305,992 - GFF2880 0.36 +0.9 305,992 - GFF2880 0.36 -0.9 305,992 - GFF2880 0.36 -0.0 306,111 + GFF2880 0.45 +1.1 306,111 + GFF2880 0.45 -1.9 306,111 + GFF2880 0.45 +1.0 306,111 + GFF2880 0.45 -1.1 306,111 + GFF2880 0.45 +0.5 306,111 + GFF2880 0.45 -0.1 306,111 + GFF2880 0.45 -0.7 306,111 + GFF2880 0.45 -0.9 306,112 - GFF2880 0.45 +0.1 306,112 - GFF2880 0.45 +0.1 306,112 - GFF2880 0.45 -0.5 306,112 - GFF2880 0.45 -0.5 306,184 - GFF2880 0.51 -0.6 306,261 + GFF2880 0.57 -0.3 306,261 + GFF2880 0.57 -1.1 306,261 + GFF2880 0.57 +0.3 306,261 + GFF2880 0.57 -0.8 306,261 + GFF2880 0.57 +0.5 306,261 + GFF2880 0.57 +0.0 306,261 + GFF2880 0.57 -0.3 306,262 - GFF2880 0.57 -1.5 306,262 - GFF2880 0.57 +0.8 306,262 - GFF2880 0.57 -1.6 307,294 + GFF2881 0.43 -0.2 307,294 + GFF2881 0.43 -0.7 307,294 + GFF2881 0.43 -1.3 307,294 + GFF2881 0.43 -0.6 307,294 + GFF2881 0.43 -1.2 307,294 + GFF2881 0.43 -0.6 307,294 + GFF2881 0.43 +0.5 307,294 + GFF2881 0.43 -0.4 307,294 + GFF2881 0.43 +0.8 307,294 + GFF2881 0.43 -0.5 307,294 + GFF2881 0.43 +0.2 307,294 + GFF2881 0.43 -0.8 307,295 - GFF2881 0.43 +0.9 307,295 - GFF2881 0.43 -0.9 307,295 - GFF2881 0.43 -0.3 307,295 - GFF2881 0.43 +2.1 307,295 - GFF2881 0.43 +0.1 307,468 + GFF2881 0.59 -0.4 307,468 + GFF2881 0.59 -0.1 307,468 + GFF2881 0.59 -0.3 307,468 + GFF2881 0.59 -0.3 307,468 + GFF2881 0.59 -0.2 307,468 + GFF2881 0.59 +0.3 307,468 + GFF2881 0.59 +0.1 307,468 + GFF2881 0.59 +0.5 307,468 + GFF2881 0.59 -0.1 307,468 + GFF2881 0.59 -0.5 307,469 - GFF2881 0.59 -0.4 307,469 - GFF2881 0.59 -0.2 307,469 - GFF2881 0.59 +0.2 307,469 - GFF2881 0.59 +0.9 307,469 - GFF2881 0.59 +1.3 307,469 - GFF2881 0.59 +0.9
Or see this region's nucleotide sequence