Strain Fitness in Variovorax sp. SCN45 around GFF2801

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2800 and GFF2801 are separated by 38 nucleotidesGFF2801 and GFF2802 overlap by 4 nucleotides GFF2800 - Threonine synthase (EC 4.2.3.1), at 228,802 to 230,217 GFF2800 GFF2801 - Homoserine dehydrogenase (EC 1.1.1.3), at 230,256 to 231,605 GFF2801 GFF2802 - DUF1176 domain-containing protein, at 231,602 to 232,636 GFF2802 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1at 230.515 kb on + strand, within GFF2801at 230.518 kb on + strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.519 kb on - strand, within GFF2801at 230.689 kb on + strand, within GFF2801at 230.690 kb on - strand, within GFF2801at 230.692 kb on + strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 231.332 kb on - strand, within GFF2801at 231.561 kb on + strandat 231.561 kb on + strandat 231.561 kb on + strandat 231.561 kb on + strandat 231.561 kb on + strandat 231.562 kb on - strandat 231.562 kb on - strandat 231.654 kb on + strandat 231.655 kb on - strandat 231.655 kb on - strandat 231.856 kb on - strand, within GFF2802at 231.856 kb on - strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 232.459 kb on + strand, within GFF2802at 232.459 kb on + strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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230,515 + GFF2801 0.19 -0.3
230,518 + GFF2801 0.19 -1.5
230,519 - GFF2801 0.19 -0.5
230,519 - GFF2801 0.19 -1.3
230,519 - GFF2801 0.19 -0.1
230,519 - GFF2801 0.19 -0.5
230,519 - GFF2801 0.19 +0.2
230,519 - GFF2801 0.19 +0.8
230,519 - GFF2801 0.19 -0.5
230,519 - GFF2801 0.19 -0.5
230,519 - GFF2801 0.19 +0.0
230,519 - GFF2801 0.19 -0.3
230,519 - GFF2801 0.19 +0.1
230,519 - GFF2801 0.19 -1.3
230,519 - GFF2801 0.19 -1.0
230,519 - GFF2801 0.19 -1.5
230,519 - GFF2801 0.19 +1.5
230,689 + GFF2801 0.32 -0.6
230,690 - GFF2801 0.32 -0.1
230,692 + GFF2801 0.32 -0.6
230,693 - GFF2801 0.32 +0.2
230,693 - GFF2801 0.32 +0.3
230,693 - GFF2801 0.32 -1.8
230,693 - GFF2801 0.32 -0.9
230,693 - GFF2801 0.32 -1.0
231,332 - GFF2801 0.80 -1.6
231,561 + -0.3
231,561 + +0.9
231,561 + -0.4
231,561 + +0.7
231,561 + -1.0
231,562 - +0.4
231,562 - -0.5
231,654 + +0.8
231,655 - -0.1
231,655 - -0.8
231,856 - GFF2802 0.25 -1.0
231,856 - GFF2802 0.25 -1.0
231,894 + GFF2802 0.28 +0.3
231,894 + GFF2802 0.28 -0.8
231,894 + GFF2802 0.28 +0.9
231,894 + GFF2802 0.28 -0.1
231,894 + GFF2802 0.28 -0.3
231,894 + GFF2802 0.28 -0.4
231,894 + GFF2802 0.28 -1.4
231,894 + GFF2802 0.28 -0.3
231,894 + GFF2802 0.28 +0.3
231,895 - GFF2802 0.28 +0.6
231,895 - GFF2802 0.28 +0.8
231,895 - GFF2802 0.28 -0.2
231,895 - GFF2802 0.28 +0.9
231,895 - GFF2802 0.28 -0.0
231,895 - GFF2802 0.28 -0.1
231,895 - GFF2802 0.28 -0.8
231,895 - GFF2802 0.28 +0.2
231,895 - GFF2802 0.28 -0.6
231,895 - GFF2802 0.28 -1.0
231,895 - GFF2802 0.28 -0.3
231,900 + GFF2802 0.29 +0.5
231,900 + GFF2802 0.29 -0.3
231,900 + GFF2802 0.29 -1.1
231,900 + GFF2802 0.29 -0.3
231,901 - GFF2802 0.29 -1.0
231,901 - GFF2802 0.29 -1.1
231,901 - GFF2802 0.29 -0.2
231,901 - GFF2802 0.29 +0.2
231,901 - GFF2802 0.29 -0.2
231,901 - GFF2802 0.29 +0.4
231,901 - GFF2802 0.29 -0.1
231,901 - GFF2802 0.29 -0.2
231,901 - GFF2802 0.29 -0.2
232,459 + GFF2802 0.83 +0.3
232,459 + GFF2802 0.83 -2.0
232,460 - GFF2802 0.83 +0.7
232,460 - GFF2802 0.83 -0.3
232,460 - GFF2802 0.83 +1.5
232,460 - GFF2802 0.83 -1.0
232,460 - GFF2802 0.83 -0.3
232,460 - GFF2802 0.83 -0.1
232,460 - GFF2802 0.83 -0.2

Or see this region's nucleotide sequence