Strain Fitness in Variovorax sp. SCN45 around GFF2587

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2586 and GFF2587 are separated by 7 nucleotidesGFF2587 and GFF2588 overlap by 37 nucleotides GFF2586 - Hydrogenase assembly protein HoxX, at 641,633 to 643,354 GFF2586 GFF2587 - hypothetical protein, at 643,362 to 643,628 GFF2587 GFF2588 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 643,592 to 645,688 GFF2588 Position (kb) 643 644Strain fitness (log2 ratio) -2 -1 0 1 2at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.638 kb on + strand, within GFF2586at 642.638 kb on + strand, within GFF2586at 642.639 kb on - strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.953 kb on + strand, within GFF2586at 642.954 kb on - strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 643.363 kb on + strandat 643.363 kb on + strandat 643.363 kb on + strandat 643.363 kb on + strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.776 kb on + strandat 643.776 kb on + strandat 643.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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642,428 + GFF2586 0.46 -0.0
642,428 + GFF2586 0.46 +0.2
642,428 + GFF2586 0.46 +0.2
642,428 + GFF2586 0.46 +0.1
642,428 + GFF2586 0.46 +0.1
642,428 + GFF2586 0.46 -0.3
642,429 - GFF2586 0.46 -0.3
642,429 - GFF2586 0.46 -0.7
642,429 - GFF2586 0.46 -1.1
642,429 - GFF2586 0.46 -0.0
642,638 + GFF2586 0.58 +0.2
642,638 + GFF2586 0.58 -0.1
642,639 - GFF2586 0.58 +0.1
642,923 + GFF2586 0.75 +0.8
642,923 + GFF2586 0.75 +0.1
642,923 + GFF2586 0.75 +1.0
642,923 + GFF2586 0.75 +0.9
642,923 + GFF2586 0.75 -2.1
642,924 - GFF2586 0.75 +0.1
642,924 - GFF2586 0.75 -1.0
642,924 - GFF2586 0.75 -0.2
642,924 - GFF2586 0.75 +0.1
642,953 + GFF2586 0.77 +0.6
642,954 - GFF2586 0.77 -1.2
642,962 + GFF2586 0.77 +0.4
642,962 + GFF2586 0.77 -0.0
642,962 + GFF2586 0.77 +0.4
642,962 + GFF2586 0.77 +2.0
642,962 + GFF2586 0.77 -0.1
642,962 + GFF2586 0.77 +0.1
642,962 + GFF2586 0.77 -0.1
642,962 + GFF2586 0.77 +0.2
642,962 + GFF2586 0.77 +0.1
642,962 + GFF2586 0.77 +0.9
642,962 + GFF2586 0.77 +0.1
642,962 + GFF2586 0.77 -0.2
642,962 + GFF2586 0.77 -0.0
642,963 - GFF2586 0.77 +0.8
642,963 - GFF2586 0.77 +1.1
642,963 - GFF2586 0.77 +0.5
642,963 - GFF2586 0.77 -0.7
642,963 - GFF2586 0.77 +0.4
642,963 - GFF2586 0.77 -0.9
642,963 - GFF2586 0.77 -0.4
642,963 - GFF2586 0.77 -0.1
643,363 + -1.0
643,363 + -0.6
643,363 + +0.1
643,363 + +0.4
643,364 - +0.6
643,364 - -0.3
643,364 - +1.0
643,364 - -0.1
643,364 - +0.6
643,364 - -0.1
643,364 - +0.9
643,364 - +1.0
643,364 - +0.4
643,497 + GFF2587 0.51 +0.7
643,497 + GFF2587 0.51 +0.2
643,497 + GFF2587 0.51 +0.3
643,497 + GFF2587 0.51 +0.4
643,497 + GFF2587 0.51 +0.8
643,497 + GFF2587 0.51 +0.5
643,497 + GFF2587 0.51 -0.9
643,497 + GFF2587 0.51 -0.9
643,498 - GFF2587 0.51 +0.1
643,498 - GFF2587 0.51 +0.1
643,498 - GFF2587 0.51 +0.9
643,498 - GFF2587 0.51 -0.1
643,776 + -0.9
643,776 + +1.6
643,777 - -2.1

Or see this region's nucleotide sequence