Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF244 and GFF245 overlap by 4 nucleotides GFF245 and GFF246 are separated by 131 nucleotides GFF246 and GFF247 are separated by 72 nucleotides
GFF244 - Cys regulon transcriptional activator CysB, at 271,858 to 272,799
GFF244
GFF245 - Aspartate aminotransferase (EC 2.6.1.1), at 272,796 to 273,968
GFF245
GFF246 - Transmembrane protein Msl3831, at 274,100 to 274,258
GFF246
GFF247 - ATP-dependent helicase HrpA, at 274,331 to 278,116
GFF247
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 271.842 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 272.173 kb on + strand, within GFF244 at 272.173 kb on + strand, within GFF244 at 272.174 kb on - strand, within GFF244 at 272.347 kb on + strand, within GFF244 at 272.348 kb on - strand, within GFF244 at 272.348 kb on - strand, within GFF244 at 272.446 kb on + strand, within GFF244 at 272.446 kb on + strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.662 kb on - strand, within GFF244 at 272.692 kb on + strand, within GFF244 at 272.693 kb on - strand, within GFF244 at 272.788 kb on + strand at 272.788 kb on + strand at 272.788 kb on + strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 273.057 kb on + strand, within GFF245 at 273.057 kb on + strand, within GFF245 at 273.058 kb on - strand, within GFF245 at 273.058 kb on - strand, within GFF245 at 273.058 kb on - strand, within GFF245 at 273.069 kb on + strand, within GFF245 at 273.069 kb on + strand, within GFF245 at 273.070 kb on - strand, within GFF245 at 273.180 kb on + strand, within GFF245 at 273.181 kb on - strand, within GFF245 at 273.181 kb on - strand, within GFF245 at 273.181 kb on - strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.420 kb on + strand, within GFF245 at 273.420 kb on + strand, within GFF245 at 273.421 kb on - strand, within GFF245 at 273.421 kb on - strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.645 kb on + strand, within GFF245 at 273.645 kb on + strand, within GFF245 at 273.645 kb on + strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.666 kb on + strand, within GFF245 at 273.687 kb on + strand, within GFF245 at 273.688 kb on - strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.873 kb on + strand at 273.873 kb on + strand at 273.873 kb on + strand at 273.874 kb on - strand at 273.874 kb on - strand at 273.874 kb on - strand at 273.874 kb on - strand at 274.000 kb on + strand at 274.140 kb on + strand, within GFF246 at 274.140 kb on + strand, within GFF246 at 274.141 kb on - strand, within GFF246 at 274.141 kb on - strand, within GFF246 at 274.147 kb on - strand, within GFF246 at 274.169 kb on + strand, within GFF246 at 274.169 kb on + strand, within GFF246 at 274.170 kb on - strand, within GFF246 at 274.170 kb on - strand, within GFF246 at 274.170 kb on - strand, within GFF246 at 274.171 kb on + strand, within GFF246 at 274.172 kb on - strand, within GFF246 at 274.187 kb on + strand, within GFF246 at 274.187 kb on + strand, within GFF246 at 274.187 kb on + strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.497 kb on + strand at 274.498 kb on - strand at 274.735 kb on - strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 271,842 + -0.3 271,938 + +0.0 271,938 + -0.0 271,938 + +0.0 271,938 + +1.0 271,938 + -0.6 271,939 - +0.3 271,939 - -0.1 271,939 - -1.7 271,939 - +0.8 271,939 - +0.4 271,939 - -1.7 271,939 - -0.3 272,173 + GFF244 0.33 +2.1 272,173 + GFF244 0.33 -1.0 272,174 - GFF244 0.34 +1.3 272,347 + GFF244 0.52 +1.3 272,348 - GFF244 0.52 +1.3 272,348 - GFF244 0.52 -2.2 272,446 + GFF244 0.62 -0.5 272,446 + GFF244 0.62 +0.2 272,447 - GFF244 0.63 -0.8 272,447 - GFF244 0.63 -0.7 272,447 - GFF244 0.63 -0.1 272,554 + GFF244 0.74 -0.7 272,554 + GFF244 0.74 +0.7 272,554 + GFF244 0.74 -0.5 272,554 + GFF244 0.74 +1.3 272,554 + GFF244 0.74 -0.0 272,555 - GFF244 0.74 +0.1 272,555 - GFF244 0.74 +0.0 272,555 - GFF244 0.74 -1.3 272,662 - GFF244 0.85 +2.4 272,692 + GFF244 0.89 -1.0 272,693 - GFF244 0.89 +0.1 272,788 + +1.7 272,788 + +0.3 272,788 + -0.1 272,789 - -0.5 272,789 - -0.2 272,789 - -0.1 272,789 - -1.5 272,789 - +1.3 272,789 - +0.0 272,795 + -0.6 272,795 + +1.0 272,795 + +0.2 272,795 + -0.0 272,795 + -0.7 272,795 + -0.1 272,796 - -0.3 272,796 - +0.2 272,796 - +1.5 272,796 - -0.5 272,796 - -0.5 272,796 - -1.0 272,796 - -1.0 272,796 - -0.1 272,796 - -0.6 272,796 - -1.4 272,796 - +0.3 272,796 - +1.3 272,796 - -0.1 272,796 - +0.7 273,057 + GFF245 0.22 -0.3 273,057 + GFF245 0.22 +0.7 273,058 - GFF245 0.22 +0.4 273,058 - GFF245 0.22 +0.5 273,058 - GFF245 0.22 -1.0 273,069 + GFF245 0.23 +0.1 273,069 + GFF245 0.23 -1.0 273,070 - GFF245 0.23 +0.3 273,180 + GFF245 0.33 -0.8 273,181 - GFF245 0.33 -0.7 273,181 - GFF245 0.33 -1.0 273,181 - GFF245 0.33 -0.1 273,189 + GFF245 0.34 +0.6 273,189 + GFF245 0.34 -0.5 273,189 + GFF245 0.34 -0.7 273,189 + GFF245 0.34 +1.3 273,189 + GFF245 0.34 +0.3 273,189 + GFF245 0.34 -0.4 273,189 + GFF245 0.34 +1.0 273,189 + GFF245 0.34 +1.3 273,189 + GFF245 0.34 +0.4 273,189 + GFF245 0.34 +0.1 273,189 + GFF245 0.34 -0.5 273,189 + GFF245 0.34 +0.4 273,190 - GFF245 0.34 -1.5 273,190 - GFF245 0.34 -0.5 273,190 - GFF245 0.34 -0.9 273,190 - GFF245 0.34 +0.3 273,190 - GFF245 0.34 -0.2 273,190 - GFF245 0.34 -0.5 273,190 - GFF245 0.34 +0.9 273,190 - GFF245 0.34 -0.1 273,420 + GFF245 0.53 -0.3 273,420 + GFF245 0.53 +0.7 273,421 - GFF245 0.53 +0.1 273,421 - GFF245 0.53 +0.8 273,519 + GFF245 0.62 -2.2 273,519 + GFF245 0.62 +1.3 273,519 + GFF245 0.62 -1.3 273,519 + GFF245 0.62 +0.7 273,519 + GFF245 0.62 -0.2 273,520 - GFF245 0.62 +0.5 273,520 - GFF245 0.62 +0.1 273,520 - GFF245 0.62 -0.5 273,520 - GFF245 0.62 +0.7 273,520 - GFF245 0.62 -0.9 273,645 + GFF245 0.72 -0.5 273,645 + GFF245 0.72 +0.0 273,645 + GFF245 0.72 -1.0 273,646 - GFF245 0.72 -0.1 273,646 - GFF245 0.72 -0.6 273,646 - GFF245 0.72 -1.5 273,646 - GFF245 0.72 -0.7 273,666 + GFF245 0.74 +0.5 273,687 + GFF245 0.76 +0.8 273,688 - GFF245 0.76 +1.4 273,765 + GFF245 0.83 +0.4 273,765 + GFF245 0.83 -1.6 273,765 + GFF245 0.83 +1.7 273,765 + GFF245 0.83 +0.1 273,766 - GFF245 0.83 +0.1 273,766 - GFF245 0.83 +1.3 273,766 - GFF245 0.83 -0.2 273,766 - GFF245 0.83 +0.0 273,766 - GFF245 0.83 -1.5 273,873 + +0.0 273,873 + +0.4 273,873 + -1.3 273,874 - -1.3 273,874 - -0.7 273,874 - +0.3 273,874 - +1.3 274,000 + -0.1 274,140 + GFF246 0.25 +0.1 274,140 + GFF246 0.25 -0.3 274,141 - GFF246 0.26 -1.4 274,141 - GFF246 0.26 +0.1 274,147 - GFF246 0.30 -0.5 274,169 + GFF246 0.43 -0.5 274,169 + GFF246 0.43 -0.6 274,170 - GFF246 0.44 +0.1 274,170 - GFF246 0.44 -1.2 274,170 - GFF246 0.44 -2.2 274,171 + GFF246 0.45 +0.7 274,172 - GFF246 0.45 +1.3 274,187 + GFF246 0.55 -0.1 274,187 + GFF246 0.55 -1.9 274,187 + GFF246 0.55 -0.0 274,188 - GFF246 0.55 +0.7 274,188 - GFF246 0.55 +0.6 274,188 - GFF246 0.55 -0.3 274,188 - GFF246 0.55 +0.3 274,188 - GFF246 0.55 -1.8 274,254 + +0.0 274,254 + -0.9 274,254 + -0.7 274,254 + +0.4 274,254 + -0.3 274,254 + -0.3 274,254 + +1.0 274,254 + +0.8 274,254 + -0.7 274,254 + +3.1 274,254 + -0.1 274,255 - -0.4 274,255 - -0.4 274,255 - +0.1 274,255 - -0.2 274,255 - -1.1 274,255 - +0.4 274,255 - -0.3 274,255 - +0.2 274,255 - +0.6 274,256 + -0.7 274,256 + +0.1 274,256 + +0.1 274,256 + +0.5 274,256 + +0.4 274,256 + -0.1 274,256 + +1.3 274,256 + -0.7 274,256 + -0.6 274,256 + -0.3 274,256 + -0.7 274,257 - -0.3 274,257 - -0.1 274,257 - -0.1 274,257 - -0.2 274,257 - +0.9 274,257 - +0.7 274,257 - +0.4 274,257 - -0.9 274,257 - -0.0 274,257 - -0.3 274,497 + -1.0 274,498 - -0.6 274,735 - GFF247 0.11 -0.8 274,923 + GFF247 0.16 -0.3 274,923 + GFF247 0.16 +0.3 274,923 + GFF247 0.16 -0.8 274,923 + GFF247 0.16 -0.2 274,924 - GFF247 0.16 -0.0 274,924 - GFF247 0.16 -0.0 274,924 - GFF247 0.16 +0.3 274,924 - GFF247 0.16 +0.3 274,924 - GFF247 0.16 -0.4 274,924 - GFF247 0.16 -0.5
Or see this region's nucleotide sequence