Strain Fitness in Variovorax sp. SCN45 around GFF2384

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2383 and GFF2384 are separated by 178 nucleotidesGFF2384 and GFF2385 are separated by 40 nucleotidesGFF2385 and GFF2386 are separated by 426 nucleotides GFF2383 - Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW, at 436,908 to 438,170 GFF2383 GFF2384 - no description, at 438,349 to 438,921 GFF2384 GFF2385 - no description, at 438,962 to 439,252 GFF2385 GFF2386 - Response regulator BaeR, at 439,679 to 439,999 GFF2386 Position (kb) 438 439Strain fitness (log2 ratio) -1 0 1at 437.358 kb on + strand, within GFF2383at 437.514 kb on + strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.670 kb on + strand, within GFF2383at 437.739 kb on + strand, within GFF2383at 437.779 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.806 kb on + strand, within GFF2383at 437.807 kb on - strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.296 kb on - strandat 438.296 kb on - strandat 438.296 kb on - strandat 438.296 kb on - strandat 438.301 kb on + strandat 438.301 kb on + strandat 438.301 kb on + strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.461 kb on - strand, within GFF2384at 438.569 kb on + strand, within GFF2384at 438.570 kb on - strand, within GFF2384at 438.570 kb on - strand, within GFF2384at 438.570 kb on - strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.672 kb on + strand, within GFF2384at 438.673 kb on - strand, within GFF2384at 438.818 kb on + strand, within GFF2384at 438.819 kb on - strand, within GFF2384at 438.839 kb on + strand, within GFF2384at 438.845 kb on + strand, within GFF2384at 438.846 kb on - strand, within GFF2384at 438.942 kb on + strandat 438.943 kb on - strandat 438.963 kb on + strandat 438.964 kb on - strandat 439.010 kb on - strand, within GFF2385at 439.010 kb on - strand, within GFF2385at 439.137 kb on - strand, within GFF2385at 439.145 kb on - strand, within GFF2385at 439.145 kb on - strand, within GFF2385at 439.147 kb on - strand, within GFF2385at 439.147 kb on - strand, within GFF2385at 439.407 kb on + strandat 439.408 kb on - strandat 439.408 kb on - strandat 439.408 kb on - strandat 439.408 kb on - strandat 439.409 kb on + strandat 439.409 kb on + strandat 439.410 kb on - strandat 439.410 kb on - strandat 439.410 kb on - strandat 439.410 kb on - strandat 439.628 kb on - strandat 439.629 kb on + strandat 439.630 kb on - strandat 439.650 kb on + strandat 439.651 kb on - strandat 439.862 kb on + strand, within GFF2386at 439.863 kb on - strand, within GFF2386at 439.863 kb on - strand, within GFF2386at 439.863 kb on - strand, within GFF2386

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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437,358 + GFF2383 0.36 +0.2
437,514 + GFF2383 0.48 -0.3
437,515 - GFF2383 0.48 -1.7
437,515 - GFF2383 0.48 +1.6
437,515 - GFF2383 0.48 -0.4
437,515 - GFF2383 0.48 -0.0
437,515 - GFF2383 0.48 +0.1
437,515 - GFF2383 0.48 +0.8
437,515 - GFF2383 0.48 +0.4
437,515 - GFF2383 0.48 -1.2
437,515 - GFF2383 0.48 -0.3
437,598 + GFF2383 0.55 +0.3
437,598 + GFF2383 0.55 +0.2
437,598 + GFF2383 0.55 +1.1
437,598 + GFF2383 0.55 -0.3
437,670 + GFF2383 0.60 -1.2
437,739 + GFF2383 0.66 +0.3
437,779 - GFF2383 0.69 -0.6
437,797 - GFF2383 0.70 -0.2
437,797 - GFF2383 0.70 -0.2
437,797 - GFF2383 0.70 -0.2
437,797 - GFF2383 0.70 -1.6
437,806 + GFF2383 0.71 +0.6
437,807 - GFF2383 0.71 -0.3
437,883 + GFF2383 0.77 +0.3
437,883 + GFF2383 0.77 -1.2
437,883 + GFF2383 0.77 -0.4
437,884 - GFF2383 0.77 -0.4
437,884 - GFF2383 0.77 +1.2
437,884 - GFF2383 0.77 -0.0
437,884 - GFF2383 0.77 -1.4
437,884 - GFF2383 0.77 -0.5
437,884 - GFF2383 0.77 +0.1
438,295 + -0.2
438,295 + +0.0
438,295 + +0.0
438,295 + -0.5
438,295 + +0.6
438,295 + +0.6
438,295 + -0.2
438,295 + +0.6
438,295 + -0.2
438,295 + +0.1
438,296 - -0.1
438,296 - -0.2
438,296 - -0.7
438,296 - -0.3
438,301 + -0.8
438,301 + +0.3
438,301 + +0.2
438,302 - -1.4
438,302 - -1.0
438,302 - -0.9
438,302 - +0.2
438,302 - -0.3
438,461 - GFF2384 0.20 -0.1
438,569 + GFF2384 0.38 -0.6
438,570 - GFF2384 0.39 -1.0
438,570 - GFF2384 0.39 -0.1
438,570 - GFF2384 0.39 +0.2
438,635 + GFF2384 0.50 -0.6
438,635 + GFF2384 0.50 -0.0
438,635 + GFF2384 0.50 -0.0
438,635 + GFF2384 0.50 -1.4
438,635 + GFF2384 0.50 +0.1
438,635 + GFF2384 0.50 +0.4
438,636 - GFF2384 0.50 -0.0
438,636 - GFF2384 0.50 -0.5
438,636 - GFF2384 0.50 +0.4
438,636 - GFF2384 0.50 -0.3
438,636 - GFF2384 0.50 -0.2
438,672 + GFF2384 0.56 +0.1
438,673 - GFF2384 0.57 -0.7
438,818 + GFF2384 0.82 +0.1
438,819 - GFF2384 0.82 +0.6
438,839 + GFF2384 0.86 -0.8
438,845 + GFF2384 0.87 -0.7
438,846 - GFF2384 0.87 -0.9
438,942 + -0.1
438,943 - -1.1
438,963 + +0.1
438,964 - -1.2
439,010 - GFF2385 0.16 +0.3
439,010 - GFF2385 0.16 +0.1
439,137 - GFF2385 0.60 -0.1
439,145 - GFF2385 0.63 +0.1
439,145 - GFF2385 0.63 -0.4
439,147 - GFF2385 0.64 -0.1
439,147 - GFF2385 0.64 +0.0
439,407 + -0.4
439,408 - +1.3
439,408 - -0.4
439,408 - -0.5
439,408 - +0.4
439,409 + +0.6
439,409 + -0.9
439,410 - +0.2
439,410 - -0.5
439,410 - +1.0
439,410 - -0.0
439,628 - +0.1
439,629 + -0.2
439,630 - +0.3
439,650 + -0.6
439,651 - +0.3
439,862 + GFF2386 0.57 +0.1
439,863 - GFF2386 0.57 -0.9
439,863 - GFF2386 0.57 -0.2
439,863 - GFF2386 0.57 -0.9

Or see this region's nucleotide sequence