Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2285 and GFF2286 are separated by 117 nucleotides GFF2286 and GFF2287 overlap by 4 nucleotides GFF2287 and GFF2288 overlap by 4 nucleotides
GFF2285 - Transcriptional regulator, RpiR family, at 340,391 to 341,281
GFF2285
GFF2286 - BUG/TctC family periplasmic protein, at 341,399 to 342,394
GFF2286
GFF2287 - ortholog of Bordetella pertussis (BX470248) BP3300, at 342,391 to 343,353
GFF2287
GFF2288 - Glutathione-regulated potassium-efflux system protein KefC, at 343,350 to 345,206
GFF2288
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 340.532 kb on + strand, within GFF2285 at 340.551 kb on + strand, within GFF2285 at 340.551 kb on + strand, within GFF2285 at 340.552 kb on - strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.672 kb on - strand, within GFF2285 at 341.094 kb on + strand, within GFF2285 at 341.094 kb on + strand, within GFF2285 at 341.095 kb on - strand, within GFF2285 at 341.095 kb on - strand, within GFF2285 at 341.253 kb on + strand at 341.253 kb on + strand at 341.387 kb on - strand at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.568 kb on - strand, within GFF2286 at 341.678 kb on + strand, within GFF2286 at 341.679 kb on - strand, within GFF2286 at 341.679 kb on - strand, within GFF2286 at 341.744 kb on + strand, within GFF2286 at 341.745 kb on - strand, within GFF2286 at 341.882 kb on + strand, within GFF2286 at 341.882 kb on + strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 342.469 kb on + strand at 342.469 kb on + strand at 342.469 kb on + strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.496 kb on + strand, within GFF2287 at 342.496 kb on + strand, within GFF2287 at 342.496 kb on + strand, within GFF2287 at 342.497 kb on - strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.688 kb on + strand, within GFF2287 at 342.688 kb on + strand, within GFF2287 at 342.689 kb on - strand, within GFF2287 at 342.814 kb on + strand, within GFF2287 at 342.814 kb on + strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.971 kb on - strand, within GFF2287 at 343.333 kb on + strand at 343.333 kb on + strand at 343.334 kb on - strand at 343.351 kb on + strand at 343.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 340,532 + GFF2285 0.16 +1.4 340,551 + GFF2285 0.18 -0.2 340,551 + GFF2285 0.18 -1.5 340,552 - GFF2285 0.18 +0.6 340,671 + GFF2285 0.31 -0.2 340,671 + GFF2285 0.31 +0.0 340,671 + GFF2285 0.31 +1.7 340,672 - GFF2285 0.32 +0.2 341,094 + GFF2285 0.79 -0.1 341,094 + GFF2285 0.79 +1.0 341,095 - GFF2285 0.79 +0.3 341,095 - GFF2285 0.79 -1.3 341,253 + -0.2 341,253 + +0.8 341,387 - -0.2 341,567 + GFF2286 0.17 -0.1 341,567 + GFF2286 0.17 -1.1 341,567 + GFF2286 0.17 -0.3 341,567 + GFF2286 0.17 -0.9 341,568 - GFF2286 0.17 -0.3 341,678 + GFF2286 0.28 -0.1 341,679 - GFF2286 0.28 -0.6 341,679 - GFF2286 0.28 -0.7 341,744 + GFF2286 0.35 -0.1 341,745 - GFF2286 0.35 -0.2 341,882 + GFF2286 0.48 -0.7 341,882 + GFF2286 0.48 -0.4 341,883 - GFF2286 0.49 +1.3 341,883 - GFF2286 0.49 -0.1 341,883 - GFF2286 0.49 +1.1 341,883 - GFF2286 0.49 -0.3 342,469 + +1.2 342,469 + -0.0 342,469 + -0.9 342,470 - -0.2 342,470 - +0.1 342,470 - -0.1 342,470 - -0.2 342,470 - +0.6 342,496 + GFF2287 0.11 -0.5 342,496 + GFF2287 0.11 +0.6 342,496 + GFF2287 0.11 -0.5 342,497 - GFF2287 0.11 +0.3 342,661 + GFF2287 0.28 +0.2 342,661 + GFF2287 0.28 -0.6 342,661 + GFF2287 0.28 +0.8 342,662 - GFF2287 0.28 -1.9 342,662 - GFF2287 0.28 +0.2 342,662 - GFF2287 0.28 +0.5 342,662 - GFF2287 0.28 +0.3 342,662 - GFF2287 0.28 +0.7 342,662 - GFF2287 0.28 -0.7 342,688 + GFF2287 0.31 -0.8 342,688 + GFF2287 0.31 +0.3 342,689 - GFF2287 0.31 +0.0 342,814 + GFF2287 0.44 -0.6 342,814 + GFF2287 0.44 +0.1 342,815 - GFF2287 0.44 -0.3 342,815 - GFF2287 0.44 -0.1 342,815 - GFF2287 0.44 +0.4 342,815 - GFF2287 0.44 +0.1 342,815 - GFF2287 0.44 -1.2 342,815 - GFF2287 0.44 +0.7 342,866 - GFF2287 0.49 -0.4 342,866 - GFF2287 0.49 -0.2 342,866 - GFF2287 0.49 -0.9 342,866 - GFF2287 0.49 +0.2 342,971 - GFF2287 0.60 -0.3 343,333 + +0.7 343,333 + +0.9 343,334 - -0.8 343,351 + +0.3 343,352 - -0.2
Or see this region's nucleotide sequence