Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2199 and GFF2200 are separated by 26 nucleotides GFF2200 and GFF2201 are separated by 39 nucleotides
GFF2199 - Type I secretion outer membrane protein, TolC family, at 260,070 to 261,638
GFF2199
GFF2200 - sigma-54-dependent transcriptional regulator, at 261,665 to 263,089
GFF2200
GFF2201 - hypothetical protein, at 263,129 to 265,156
GFF2201
Position (kb) 261
262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 260.724 kb on - strand, within GFF2199 at 260.811 kb on + strand, within GFF2199 at 260.812 kb on - strand, within GFF2199 at 261.345 kb on + strand, within GFF2199 at 261.345 kb on + strand, within GFF2199 at 261.346 kb on - strand, within GFF2199 at 261.348 kb on + strand, within GFF2199 at 261.348 kb on + strand, within GFF2199 at 261.348 kb on + strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.366 kb on + strand, within GFF2199 at 261.367 kb on - strand, within GFF2199 at 261.708 kb on + strand at 261.708 kb on + strand at 261.709 kb on - strand at 261.709 kb on - strand at 261.709 kb on - strand at 262.035 kb on + strand, within GFF2200 at 262.036 kb on - strand, within GFF2200 at 262.036 kb on - strand, within GFF2200 at 262.533 kb on + strand, within GFF2200 at 262.534 kb on - strand, within GFF2200 at 262.534 kb on - strand, within GFF2200 at 262.771 kb on - strand, within GFF2200 at 262.788 kb on + strand, within GFF2200 at 262.801 kb on - strand, within GFF2200 at 263.133 kb on + strand at 263.134 kb on - strand at 263.134 kb on - strand at 263.134 kb on - strand at 263.217 kb on - strand at 263.469 kb on - strand, within GFF2201 at 263.613 kb on + strand, within GFF2201 at 263.614 kb on - strand, within GFF2201 at 263.629 kb on + strand, within GFF2201 at 263.630 kb on - strand, within GFF2201 at 263.630 kb on - strand, within GFF2201 at 263.806 kb on + strand, within GFF2201 at 263.807 kb on - strand, within GFF2201 at 263.807 kb on - strand, within GFF2201 at 263.807 kb on - strand, within GFF2201 at 263.807 kb on - strand, within GFF2201 at 263.807 kb on - strand, within GFF2201 at 263.807 kb on - strand, within GFF2201 at 263.807 kb on - strand, within GFF2201 at 263.820 kb on + strand, within GFF2201 at 263.820 kb on + strand, within GFF2201 at 263.969 kb on + strand, within GFF2201 at 263.969 kb on + strand, within GFF2201 at 263.970 kb on - strand, within GFF2201 at 263.970 kb on - strand, within GFF2201 at 263.970 kb on - strand, within GFF2201 at 264.011 kb on + strand, within GFF2201 at 264.011 kb on + strand, within GFF2201 at 264.056 kb on + strand, within GFF2201 at 264.057 kb on - strand, within GFF2201 at 264.057 kb on - strand, within GFF2201 at 264.057 kb on - strand, within GFF2201
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 260,724 - GFF2199 0.42 +0.0 260,811 + GFF2199 0.47 -0.2 260,812 - GFF2199 0.47 +0.1 261,345 + GFF2199 0.81 -0.0 261,345 + GFF2199 0.81 +1.6 261,346 - GFF2199 0.81 -1.2 261,348 + GFF2199 0.81 -0.4 261,348 + GFF2199 0.81 +0.9 261,348 + GFF2199 0.81 +0.6 261,349 - GFF2199 0.82 +0.3 261,349 - GFF2199 0.82 +0.1 261,349 - GFF2199 0.82 -0.7 261,349 - GFF2199 0.82 -0.8 261,366 + GFF2199 0.83 +1.6 261,367 - GFF2199 0.83 -0.7 261,708 + +0.1 261,708 + -0.8 261,709 - -1.3 261,709 - -0.1 261,709 - -0.4 262,035 + GFF2200 0.26 -0.0 262,036 - GFF2200 0.26 -0.4 262,036 - GFF2200 0.26 -0.1 262,533 + GFF2200 0.61 +0.2 262,534 - GFF2200 0.61 -0.4 262,534 - GFF2200 0.61 -0.9 262,771 - GFF2200 0.78 -1.0 262,788 + GFF2200 0.79 -1.2 262,801 - GFF2200 0.80 -0.9 263,133 + -0.1 263,134 - -0.5 263,134 - +0.2 263,134 - +0.5 263,217 - +0.6 263,469 - GFF2201 0.17 -0.4 263,613 + GFF2201 0.24 +0.8 263,614 - GFF2201 0.24 +4.0 263,629 + GFF2201 0.25 -0.8 263,630 - GFF2201 0.25 +0.4 263,630 - GFF2201 0.25 -0.5 263,806 + GFF2201 0.33 -0.1 263,807 - GFF2201 0.33 -0.6 263,807 - GFF2201 0.33 +0.2 263,807 - GFF2201 0.33 -0.4 263,807 - GFF2201 0.33 -0.1 263,807 - GFF2201 0.33 -0.2 263,807 - GFF2201 0.33 +2.3 263,807 - GFF2201 0.33 -0.2 263,820 + GFF2201 0.34 -0.6 263,820 + GFF2201 0.34 -2.1 263,969 + GFF2201 0.41 +1.6 263,969 + GFF2201 0.41 +0.5 263,970 - GFF2201 0.41 -0.8 263,970 - GFF2201 0.41 +0.4 263,970 - GFF2201 0.41 -1.4 264,011 + GFF2201 0.43 -0.3 264,011 + GFF2201 0.43 -0.2 264,056 + GFF2201 0.46 +1.0 264,057 - GFF2201 0.46 -0.2 264,057 - GFF2201 0.46 -0.3 264,057 - GFF2201 0.46 -0.4
Or see this region's nucleotide sequence