Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2197 and GFF2198 are separated by 28 nucleotides GFF2198 and GFF2199 are separated by 11 nucleotides
GFF2197 - Type I secretion system ATPase, LssB family LapB, at 256,896 to 258,713
GFF2197
GFF2198 - Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC, at 258,742 to 260,058
GFF2198
GFF2199 - Type I secretion outer membrane protein, TolC family, at 260,070 to 261,638
GFF2199
Position (kb) 258
259
260
261 Strain fitness (log2 ratio) -1
0
1 at 258.105 kb on + strand, within GFF2197 at 258.105 kb on + strand, within GFF2197 at 258.106 kb on - strand, within GFF2197 at 258.106 kb on - strand, within GFF2197 at 258.106 kb on - strand, within GFF2197 at 258.142 kb on - strand, within GFF2197 at 258.142 kb on - strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.190 kb on - strand, within GFF2197 at 258.190 kb on - strand, within GFF2197 at 258.207 kb on + strand, within GFF2197 at 258.207 kb on + strand, within GFF2197 at 258.207 kb on + strand, within GFF2197 at 258.208 kb on - strand, within GFF2197 at 258.570 kb on + strand at 258.571 kb on - strand at 258.571 kb on - strand at 258.764 kb on + strand at 258.764 kb on + strand at 258.764 kb on + strand at 258.765 kb on - strand at 259.070 kb on - strand, within GFF2198 at 259.505 kb on - strand, within GFF2198 at 259.795 kb on + strand, within GFF2198 at 259.801 kb on + strand, within GFF2198 at 259.888 kb on + strand, within GFF2198 at 259.889 kb on - strand, within GFF2198 at 259.892 kb on - strand, within GFF2198 at 260.005 kb on + strand at 260.005 kb on + strand at 260.005 kb on + strand at 260.006 kb on - strand at 260.006 kb on - strand at 260.298 kb on + strand, within GFF2199 at 260.409 kb on + strand, within GFF2199 at 260.410 kb on - strand, within GFF2199 at 260.410 kb on - strand, within GFF2199 at 260.446 kb on - strand, within GFF2199 at 260.614 kb on - strand, within GFF2199 at 260.724 kb on - strand, within GFF2199 at 260.811 kb on + strand, within GFF2199 at 260.812 kb on - strand, within GFF2199
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 258,105 + GFF2197 0.67 +0.2 258,105 + GFF2197 0.67 -1.5 258,106 - GFF2197 0.67 -0.4 258,106 - GFF2197 0.67 +0.3 258,106 - GFF2197 0.67 -0.1 258,142 - GFF2197 0.69 -1.2 258,142 - GFF2197 0.69 +0.9 258,189 + GFF2197 0.71 -0.2 258,189 + GFF2197 0.71 +0.2 258,189 + GFF2197 0.71 +0.1 258,189 + GFF2197 0.71 -0.3 258,190 - GFF2197 0.71 +0.7 258,190 - GFF2197 0.71 -0.8 258,207 + GFF2197 0.72 +0.4 258,207 + GFF2197 0.72 -0.4 258,207 + GFF2197 0.72 +0.1 258,208 - GFF2197 0.72 +1.0 258,570 + +0.5 258,571 - -0.2 258,571 - -0.3 258,764 + -0.9 258,764 + +0.9 258,764 + -1.1 258,765 - +0.8 259,070 - GFF2198 0.25 +0.2 259,505 - GFF2198 0.58 +0.5 259,795 + GFF2198 0.80 -0.9 259,801 + GFF2198 0.80 +0.4 259,888 + GFF2198 0.87 -0.1 259,889 - GFF2198 0.87 -0.5 259,892 - GFF2198 0.87 -0.2 260,005 + +0.3 260,005 + -0.4 260,005 + -0.2 260,006 - +0.4 260,006 - -0.4 260,298 + GFF2199 0.15 -0.9 260,409 + GFF2199 0.22 -0.9 260,410 - GFF2199 0.22 -0.2 260,410 - GFF2199 0.22 -0.6 260,446 - GFF2199 0.24 +0.2 260,614 - GFF2199 0.35 +0.2 260,724 - GFF2199 0.42 +0.0 260,811 + GFF2199 0.47 -0.2 260,812 - GFF2199 0.47 +0.1
Or see this region's nucleotide sequence