Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2137 and GFF2138 are separated by 36 nucleotides GFF2138 and GFF2139 overlap by 4 nucleotides
GFF2137 - Ribose operon repressor, at 185,586 to 186,683
GFF2137
GFF2138 - Ribose ABC transporter, permease protein RbsC (TC 3.A.1.2.1), at 186,720 to 187,709
GFF2138
GFF2139 - Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1), at 187,706 to 189,334
GFF2139
Position (kb) 186
187
188 Strain fitness (log2 ratio) -1
0
1 at 185.828 kb on - strand, within GFF2137 at 186.365 kb on - strand, within GFF2137 at 186.415 kb on + strand, within GFF2137 at 186.466 kb on + strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.551 kb on - strand, within GFF2137 at 186.551 kb on - strand, within GFF2137 at 186.701 kb on - strand at 187.270 kb on + strand, within GFF2138 at 187.270 kb on + strand, within GFF2138 at 187.271 kb on - strand, within GFF2138 at 187.582 kb on + strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.694 kb on + strand at 187.998 kb on + strand, within GFF2139 at 188.090 kb on + strand, within GFF2139
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 185,828 - GFF2137 0.22 -0.6 186,365 - GFF2137 0.71 -0.8 186,415 + GFF2137 0.76 -0.5 186,466 + GFF2137 0.80 -0.4 186,467 - GFF2137 0.80 +0.1 186,467 - GFF2137 0.80 +0.2 186,467 - GFF2137 0.80 +1.0 186,550 + GFF2137 0.88 -0.0 186,550 + GFF2137 0.88 -0.7 186,550 + GFF2137 0.88 -0.9 186,551 - GFF2137 0.88 +0.5 186,551 - GFF2137 0.88 -0.8 186,701 - -1.2 187,270 + GFF2138 0.56 +0.8 187,270 + GFF2138 0.56 +0.4 187,271 - GFF2138 0.56 -0.6 187,582 + GFF2138 0.87 -0.0 187,583 - GFF2138 0.87 +1.0 187,583 - GFF2138 0.87 -0.1 187,642 + -0.4 187,642 + -0.9 187,642 + -0.3 187,642 + -0.3 187,642 + +0.4 187,642 + +0.9 187,643 - -0.2 187,643 - +0.6 187,643 - +0.0 187,643 - +1.2 187,643 - -0.6 187,643 - -0.1 187,694 + -0.6 187,998 + GFF2139 0.18 -0.4 188,090 + GFF2139 0.24 -1.0
Or see this region's nucleotide sequence