Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2135 and GFF2136 overlap by 4 nucleotides GFF2136 and GFF2137 overlap by 4 nucleotides GFF2137 and GFF2138 are separated by 36 nucleotides
GFF2135 - D-ribose pyranase (EC 5.4.99.62), at 184,235 to 184,627
GFF2135
GFF2136 - Ribokinase (EC 2.7.1.15), at 184,624 to 185,589
GFF2136
GFF2137 - Ribose operon repressor, at 185,586 to 186,683
GFF2137
GFF2138 - Ribose ABC transporter, permease protein RbsC (TC 3.A.1.2.1), at 186,720 to 187,709
GFF2138
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1
2
3 at 184.741 kb on + strand, within GFF2136 at 184.742 kb on - strand, within GFF2136 at 185.004 kb on - strand, within GFF2136 at 185.203 kb on + strand, within GFF2136 at 185.204 kb on - strand, within GFF2136 at 185.204 kb on - strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.828 kb on - strand, within GFF2137 at 186.365 kb on - strand, within GFF2137 at 186.415 kb on + strand, within GFF2137 at 186.466 kb on + strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.551 kb on - strand, within GFF2137 at 186.551 kb on - strand, within GFF2137 at 186.701 kb on - strand at 187.270 kb on + strand, within GFF2138 at 187.270 kb on + strand, within GFF2138 at 187.271 kb on - strand, within GFF2138 at 187.582 kb on + strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 184,741 + GFF2136 0.12 +0.4 184,742 - GFF2136 0.12 -0.3 185,004 - GFF2136 0.39 -1.7 185,203 + GFF2136 0.60 +0.0 185,204 - GFF2136 0.60 -0.9 185,204 - GFF2136 0.60 -0.4 185,448 + GFF2136 0.85 +0.1 185,448 + GFF2136 0.85 -0.7 185,448 + GFF2136 0.85 +3.6 185,828 - GFF2137 0.22 -0.6 186,365 - GFF2137 0.71 -0.8 186,415 + GFF2137 0.76 -0.5 186,466 + GFF2137 0.80 -0.4 186,467 - GFF2137 0.80 +0.1 186,467 - GFF2137 0.80 +0.2 186,467 - GFF2137 0.80 +1.0 186,550 + GFF2137 0.88 -0.0 186,550 + GFF2137 0.88 -0.7 186,550 + GFF2137 0.88 -0.9 186,551 - GFF2137 0.88 +0.5 186,551 - GFF2137 0.88 -0.8 186,701 - -1.2 187,270 + GFF2138 0.56 +0.8 187,270 + GFF2138 0.56 +0.4 187,271 - GFF2138 0.56 -0.6 187,582 + GFF2138 0.87 -0.0 187,583 - GFF2138 0.87 +1.0 187,583 - GFF2138 0.87 -0.1 187,642 + -0.4 187,642 + -0.9 187,642 + -0.3 187,642 + -0.3 187,642 + +0.4 187,642 + +0.9 187,643 - -0.2 187,643 - +0.6 187,643 - +0.0 187,643 - +1.2 187,643 - -0.6 187,643 - -0.1
Or see this region's nucleotide sequence