Strain Fitness in Variovorax sp. SCN45 around GFF2037

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2036 and GFF2037 are separated by 36 nucleotidesGFF2037 and GFF2038 are separated by 142 nucleotides GFF2036 - Ornithine cyclodeaminase (EC 4.3.1.12), at 84,329 to 85,378 GFF2036 GFF2037 - Acetylpolyamine aminohydrolase, at 85,415 to 86,455 GFF2037 GFF2038 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 86,598 to 87,581 GFF2038 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 84.524 kb on + strand, within GFF2036at 84.525 kb on - strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.537 kb on - strand, within GFF2036at 84.537 kb on - strand, within GFF2036at 84.938 kb on + strand, within GFF2036at 85.073 kb on + strand, within GFF2036at 85.073 kb on + strand, within GFF2036at 85.073 kb on + strand, within GFF2036at 85.074 kb on - strand, within GFF2036at 85.074 kb on - strand, within GFF2036at 85.229 kb on + strand, within GFF2036at 85.229 kb on + strand, within GFF2036at 85.230 kb on - strand, within GFF2036at 85.230 kb on - strand, within GFF2036at 85.244 kb on + strand, within GFF2036at 85.244 kb on + strand, within GFF2036at 85.244 kb on + strand, within GFF2036at 85.245 kb on - strand, within GFF2036at 85.245 kb on - strand, within GFF2036at 85.245 kb on - strand, within GFF2036at 85.427 kb on + strandat 85.427 kb on + strandat 85.427 kb on + strandat 85.427 kb on + strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.614 kb on - strand, within GFF2037at 85.614 kb on - strand, within GFF2037at 85.623 kb on - strand, within GFF2037at 85.695 kb on - strand, within GFF2037at 85.695 kb on - strand, within GFF2037at 86.012 kb on + strand, within GFF2037at 86.012 kb on + strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.046 kb on - strand, within GFF2037at 86.046 kb on - strand, within GFF2037at 86.099 kb on + strand, within GFF2037at 86.099 kb on + strand, within GFF2037at 86.100 kb on - strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.328 kb on - strand, within GFF2037at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.911 kb on - strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.973 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.327 kb on + strand, within GFF2038at 87.328 kb on - strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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84,524 + GFF2036 0.19 +0.5
84,525 - GFF2036 0.19 -1.3
84,536 + GFF2036 0.20 +0.8
84,536 + GFF2036 0.20 -0.4
84,536 + GFF2036 0.20 +0.6
84,536 + GFF2036 0.20 +0.6
84,537 - GFF2036 0.20 +0.1
84,537 - GFF2036 0.20 -0.6
84,938 + GFF2036 0.58 +0.1
85,073 + GFF2036 0.71 +0.1
85,073 + GFF2036 0.71 +0.3
85,073 + GFF2036 0.71 +0.2
85,074 - GFF2036 0.71 +0.5
85,074 - GFF2036 0.71 +0.2
85,229 + GFF2036 0.86 +0.9
85,229 + GFF2036 0.86 -0.1
85,230 - GFF2036 0.86 -0.4
85,230 - GFF2036 0.86 -0.7
85,244 + GFF2036 0.87 -0.5
85,244 + GFF2036 0.87 -0.7
85,244 + GFF2036 0.87 +0.3
85,245 - GFF2036 0.87 +1.4
85,245 - GFF2036 0.87 +0.4
85,245 - GFF2036 0.87 -0.6
85,427 + -0.1
85,427 + -0.4
85,427 + -1.5
85,427 + -0.9
85,428 - -0.0
85,428 - +0.2
85,428 - -0.9
85,428 - +0.2
85,428 - -0.2
85,614 - GFF2037 0.19 -0.4
85,614 - GFF2037 0.19 -0.3
85,623 - GFF2037 0.20 +0.2
85,695 - GFF2037 0.27 -0.8
85,695 - GFF2037 0.27 +0.2
86,012 + GFF2037 0.57 +0.6
86,012 + GFF2037 0.57 -0.9
86,013 - GFF2037 0.57 +1.0
86,013 - GFF2037 0.57 -0.5
86,013 - GFF2037 0.57 -0.6
86,013 - GFF2037 0.57 +0.2
86,013 - GFF2037 0.57 +0.2
86,013 - GFF2037 0.57 -0.4
86,045 + GFF2037 0.61 +0.5
86,045 + GFF2037 0.61 -1.6
86,045 + GFF2037 0.61 -0.8
86,045 + GFF2037 0.61 -0.4
86,045 + GFF2037 0.61 +0.1
86,046 - GFF2037 0.61 -1.3
86,046 - GFF2037 0.61 +0.7
86,099 + GFF2037 0.66 -0.1
86,099 + GFF2037 0.66 -0.3
86,100 - GFF2037 0.66 +0.6
86,105 + GFF2037 0.66 -0.3
86,105 + GFF2037 0.66 +1.2
86,105 + GFF2037 0.66 -0.2
86,105 + GFF2037 0.66 +0.8
86,105 + GFF2037 0.66 -0.4
86,105 + GFF2037 0.66 +0.2
86,106 - GFF2037 0.66 -0.3
86,106 - GFF2037 0.66 -0.7
86,106 - GFF2037 0.66 -0.5
86,106 - GFF2037 0.66 -0.2
86,106 - GFF2037 0.66 +0.4
86,108 + GFF2037 0.67 -0.3
86,108 + GFF2037 0.67 +0.8
86,108 + GFF2037 0.67 +0.5
86,108 + GFF2037 0.67 +0.4
86,108 + GFF2037 0.67 -0.1
86,108 + GFF2037 0.67 +0.0
86,109 - GFF2037 0.67 +0.3
86,109 - GFF2037 0.67 +0.1
86,109 - GFF2037 0.67 +0.5
86,109 - GFF2037 0.67 -0.2
86,109 - GFF2037 0.67 +0.2
86,109 - GFF2037 0.67 +0.2
86,109 - GFF2037 0.67 +0.4
86,328 - GFF2037 0.88 +0.8
86,868 + GFF2038 0.27 +0.8
86,868 + GFF2038 0.27 +0.6
86,868 + GFF2038 0.27 +0.2
86,868 + GFF2038 0.27 -0.7
86,868 + GFF2038 0.27 -0.9
86,869 - GFF2038 0.28 -0.6
86,869 - GFF2038 0.28 -0.5
86,869 - GFF2038 0.28 +1.0
86,869 - GFF2038 0.28 +0.4
86,910 + GFF2038 0.32 +1.1
86,910 + GFF2038 0.32 +0.8
86,910 + GFF2038 0.32 -0.6
86,910 + GFF2038 0.32 +0.6
86,911 - GFF2038 0.32 +0.1
86,952 + GFF2038 0.36 +0.5
86,952 + GFF2038 0.36 +0.6
86,952 + GFF2038 0.36 -0.2
86,952 + GFF2038 0.36 +0.2
86,952 + GFF2038 0.36 +0.7
86,952 + GFF2038 0.36 -0.1
86,952 + GFF2038 0.36 +0.8
86,952 + GFF2038 0.36 +0.1
86,952 + GFF2038 0.36 +0.1
86,952 + GFF2038 0.36 -0.8
86,953 - GFF2038 0.36 -1.1
86,953 - GFF2038 0.36 +0.0
86,953 - GFF2038 0.36 +0.2
86,953 - GFF2038 0.36 +0.1
86,953 - GFF2038 0.36 -0.1
86,953 - GFF2038 0.36 +0.2
86,953 - GFF2038 0.36 +0.7
86,953 - GFF2038 0.36 -0.4
86,953 - GFF2038 0.36 +0.6
86,973 + GFF2038 0.38 -0.5
87,066 + GFF2038 0.48 -1.0
87,066 + GFF2038 0.48 +0.2
87,066 + GFF2038 0.48 +0.4
87,066 + GFF2038 0.48 -0.4
87,066 + GFF2038 0.48 +0.1
87,066 + GFF2038 0.48 -0.4
87,066 + GFF2038 0.48 -0.4
87,067 - GFF2038 0.48 +0.9
87,067 - GFF2038 0.48 +1.0
87,067 - GFF2038 0.48 -0.4
87,067 - GFF2038 0.48 -2.5
87,067 - GFF2038 0.48 -0.5
87,153 + GFF2038 0.56 -0.4
87,153 + GFF2038 0.56 -1.4
87,153 + GFF2038 0.56 -0.6
87,153 + GFF2038 0.56 -0.1
87,153 + GFF2038 0.56 -0.9
87,153 + GFF2038 0.56 +0.6
87,153 + GFF2038 0.56 +0.5
87,154 - GFF2038 0.57 -0.0
87,154 - GFF2038 0.57 -0.9
87,154 - GFF2038 0.57 -0.1
87,154 - GFF2038 0.57 +1.6
87,154 - GFF2038 0.57 -1.7
87,327 + GFF2038 0.74 -1.7
87,328 - GFF2038 0.74 -1.6
87,438 + GFF2038 0.85 +0.3
87,438 + GFF2038 0.85 -0.3
87,438 + GFF2038 0.85 +0.0
87,438 + GFF2038 0.85 -0.6
87,438 + GFF2038 0.85 -0.5
87,438 + GFF2038 0.85 +0.3
87,438 + GFF2038 0.85 -0.4
87,439 - GFF2038 0.85 -0.3
87,439 - GFF2038 0.85 -0.1
87,439 - GFF2038 0.85 +0.1
87,439 - GFF2038 0.85 -0.2

Or see this region's nucleotide sequence