Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1929 and GFF1930 are separated by 256 nucleotides GFF1930 and GFF1931 overlap by 4 nucleotides
GFF1929 - Transcriptional regulator, AraC family, at 609,311 to 610,228
GFF1929
GFF1930 - RTX toxin transporter, ATP-binding protein, at 610,485 to 612,728
GFF1930
GFF1931 - RTX toxin transporter, determinant D, at 612,725 to 614,209
GFF1931
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.572 kb on + strand, within GFF1929 at 609.572 kb on + strand, within GFF1929 at 609.692 kb on + strand, within GFF1929 at 609.692 kb on + strand, within GFF1929 at 609.693 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.995 kb on + strand, within GFF1929 at 610.207 kb on + strand at 610.208 kb on - strand at 610.226 kb on + strand at 610.227 kb on - strand at 610.227 kb on - strand at 610.304 kb on - strand at 610.368 kb on - strand at 610.392 kb on - strand at 610.392 kb on - strand at 610.427 kb on + strand at 610.460 kb on + strand at 610.463 kb on + strand at 610.469 kb on - strand at 610.493 kb on - strand at 611.173 kb on + strand, within GFF1930 at 611.278 kb on - strand, within GFF1930 at 611.419 kb on - strand, within GFF1930 at 611.419 kb on - strand, within GFF1930 at 611.463 kb on + strand, within GFF1930 at 611.464 kb on - strand, within GFF1930 at 611.641 kb on - strand, within GFF1930 at 611.713 kb on + strand, within GFF1930 at 612.340 kb on - strand, within GFF1930 at 612.340 kb on - strand, within GFF1930 at 612.648 kb on + strand at 612.816 kb on - strand at 613.647 kb on - strand, within GFF1931
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 609,572 + GFF1929 0.28 -0.1 609,572 + GFF1929 0.28 -0.9 609,692 + GFF1929 0.42 +0.1 609,692 + GFF1929 0.42 -1.0 609,693 - GFF1929 0.42 -0.3 609,924 - GFF1929 0.67 +2.7 609,924 - GFF1929 0.67 +0.2 609,924 - GFF1929 0.67 -0.5 609,995 + GFF1929 0.75 -0.9 610,207 + +0.4 610,208 - -1.5 610,226 + -1.5 610,227 - +1.5 610,227 - -0.4 610,304 - -1.1 610,368 - +0.0 610,392 - -0.3 610,392 - -1.4 610,427 + -0.3 610,460 + -0.2 610,463 + +0.7 610,469 - -0.3 610,493 - -0.7 611,173 + GFF1930 0.31 -1.3 611,278 - GFF1930 0.35 -0.6 611,419 - GFF1930 0.42 -0.3 611,419 - GFF1930 0.42 -1.8 611,463 + GFF1930 0.44 +0.4 611,464 - GFF1930 0.44 -0.7 611,641 - GFF1930 0.52 -0.6 611,713 + GFF1930 0.55 -0.1 612,340 - GFF1930 0.83 -0.8 612,340 - GFF1930 0.83 -0.9 612,648 + -0.5 612,816 - -0.1 613,647 - GFF1931 0.62 -0.1
Or see this region's nucleotide sequence