Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1889 and GFF1890 are separated by 21 nucleotides GFF1890 and GFF1891 are separated by 127 nucleotides
GFF1889 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, at 565,063 to 566,451
GFF1889
GFF1890 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 566,473 to 567,855
GFF1890
GFF1891 - Transcriptional regulator, GntR family, at 567,983 to 568,726
GFF1891
Position (kb) 566
567
568 Strain fitness (log2 ratio) -2
-1
0
1 at 565.479 kb on - strand, within GFF1889 at 565.757 kb on + strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 566.377 kb on + strand at 566.537 kb on + strand at 566.537 kb on + strand at 566.538 kb on - strand at 566.538 kb on - strand at 567.029 kb on + strand, within GFF1890 at 567.029 kb on + strand, within GFF1890 at 567.029 kb on + strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.335 kb on + strand, within GFF1890 at 567.530 kb on + strand, within GFF1890 at 567.731 kb on + strand at 567.869 kb on + strand at 567.870 kb on - strand at 567.915 kb on + strand at 567.928 kb on - strand at 567.947 kb on - strand at 568.103 kb on + strand, within GFF1891 at 568.103 kb on + strand, within GFF1891 at 568.103 kb on + strand, within GFF1891 at 568.104 kb on - strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.439 kb on + strand, within GFF1891 at 568.440 kb on - strand, within GFF1891 at 568.508 kb on + strand, within GFF1891 at 568.509 kb on - strand, within GFF1891 at 568.628 kb on + strand, within GFF1891 at 568.629 kb on - strand, within GFF1891
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 565,479 - GFF1889 0.30 -0.7 565,757 + GFF1889 0.50 -0.5 565,758 - GFF1889 0.50 +0.2 565,758 - GFF1889 0.50 +0.0 565,758 - GFF1889 0.50 -0.4 565,758 - GFF1889 0.50 +0.5 565,758 - GFF1889 0.50 +0.1 566,377 + +0.7 566,537 + +0.3 566,537 + -0.5 566,538 - +1.3 566,538 - -0.7 567,029 + GFF1890 0.40 +0.1 567,029 + GFF1890 0.40 -0.6 567,029 + GFF1890 0.40 +0.3 567,030 - GFF1890 0.40 +0.2 567,030 - GFF1890 0.40 +1.1 567,030 - GFF1890 0.40 +1.7 567,030 - GFF1890 0.40 -0.6 567,030 - GFF1890 0.40 -0.6 567,335 + GFF1890 0.62 +0.2 567,530 + GFF1890 0.76 +0.6 567,731 + -0.4 567,869 + +0.2 567,870 - +0.4 567,915 + +0.2 567,928 - -0.6 567,947 - -0.6 568,103 + GFF1891 0.16 -0.8 568,103 + GFF1891 0.16 +1.1 568,103 + GFF1891 0.16 +1.1 568,104 - GFF1891 0.16 -1.1 568,424 + GFF1891 0.59 -0.9 568,424 + GFF1891 0.59 +1.4 568,424 + GFF1891 0.59 -0.7 568,424 + GFF1891 0.59 +1.1 568,425 - GFF1891 0.59 +1.0 568,425 - GFF1891 0.59 -1.9 568,425 - GFF1891 0.59 -0.6 568,425 - GFF1891 0.59 +0.4 568,425 - GFF1891 0.59 +1.5 568,425 - GFF1891 0.59 -0.3 568,439 + GFF1891 0.61 -0.1 568,440 - GFF1891 0.61 -0.0 568,508 + GFF1891 0.71 -0.4 568,509 - GFF1891 0.71 -0.3 568,628 + GFF1891 0.87 +0.7 568,629 - GFF1891 0.87 +0.3
Or see this region's nucleotide sequence