Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1804 and GFF1805 are separated by 73 nucleotides GFF1805 and GFF1806 are separated by 5 nucleotides GFF1806 and GFF1807 are separated by 51 nucleotides
GFF1804 - Uncharacterized UPF0118 membrane protein, at 467,462 to 468,580
GFF1804
GFF1805 - Transcriptional regulator, GntR family, at 468,654 to 469,358
GFF1805
GFF1806 - Na+/H+-dicarboxylate symporter, at 469,364 to 470,707
GFF1806
GFF1807 - no description, at 470,759 to 470,875
GFF1807
Position (kb) 469
470
471 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.596 kb on + strand at 468.596 kb on + strand at 468.596 kb on + strand at 468.872 kb on - strand, within GFF1805 at 469.159 kb on + strand, within GFF1805 at 469.159 kb on + strand, within GFF1805 at 469.159 kb on + strand, within GFF1805 at 469.160 kb on - strand, within GFF1805 at 469.160 kb on - strand, within GFF1805 at 469.397 kb on + strand at 469.398 kb on - strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.450 kb on - strand at 469.450 kb on - strand at 469.450 kb on - strand at 469.450 kb on - strand at 469.761 kb on - strand, within GFF1806 at 469.761 kb on - strand, within GFF1806 at 469.779 kb on + strand, within GFF1806 at 469.779 kb on + strand, within GFF1806 at 469.779 kb on + strand, within GFF1806 at 469.779 kb on + strand, within GFF1806 at 469.779 kb on + strand, within GFF1806 at 469.779 kb on + strand, within GFF1806 at 469.779 kb on + strand, within GFF1806 at 469.780 kb on - strand, within GFF1806 at 469.780 kb on - strand, within GFF1806 at 469.809 kb on + strand, within GFF1806 at 469.809 kb on + strand, within GFF1806 at 469.938 kb on + strand, within GFF1806 at 469.938 kb on + strand, within GFF1806 at 469.938 kb on + strand, within GFF1806 at 469.938 kb on + strand, within GFF1806 at 469.939 kb on - strand, within GFF1806 at 469.939 kb on - strand, within GFF1806 at 469.939 kb on - strand, within GFF1806 at 470.022 kb on + strand, within GFF1806 at 470.022 kb on + strand, within GFF1806 at 470.022 kb on + strand, within GFF1806 at 470.022 kb on + strand, within GFF1806 at 470.023 kb on - strand, within GFF1806 at 470.070 kb on + strand, within GFF1806 at 470.070 kb on + strand, within GFF1806 at 470.071 kb on - strand, within GFF1806 at 470.071 kb on - strand, within GFF1806 at 470.352 kb on + strand, within GFF1806 at 470.352 kb on + strand, within GFF1806 at 470.352 kb on + strand, within GFF1806 at 470.352 kb on + strand, within GFF1806 at 470.352 kb on + strand, within GFF1806 at 470.353 kb on - strand, within GFF1806 at 470.353 kb on - strand, within GFF1806 at 470.353 kb on - strand, within GFF1806 at 470.353 kb on - strand, within GFF1806 at 470.472 kb on + strand, within GFF1806 at 470.472 kb on + strand, within GFF1806 at 470.473 kb on - strand, within GFF1806 at 470.473 kb on - strand, within GFF1806 at 470.473 kb on - strand, within GFF1806 at 470.473 kb on - strand, within GFF1806 at 470.473 kb on - strand, within GFF1806 at 470.473 kb on - strand, within GFF1806 at 470.473 kb on - strand, within GFF1806 at 470.623 kb on - strand at 470.623 kb on - strand at 470.775 kb on + strand, within GFF1807 at 470.808 kb on - strand, within GFF1807 at 470.873 kb on + strand at 470.873 kb on + strand at 470.873 kb on + strand at 470.873 kb on + strand at 470.874 kb on - strand at 470.874 kb on - strand at 470.874 kb on - strand at 470.874 kb on - strand at 470.874 kb on - strand at 470.874 kb on - strand at 470.874 kb on - strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.973 kb on - strand at 470.973 kb on - strand at 470.988 kb on + strand at 470.988 kb on + strand at 470.989 kb on - strand at 471.105 kb on + strand at 471.105 kb on + strand at 471.106 kb on - strand at 471.107 kb on + strand at 471.107 kb on + strand at 471.108 kb on - strand at 471.108 kb on - strand at 471.149 kb on - strand at 471.149 kb on - strand at 471.157 kb on + strand at 471.157 kb on + strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.163 kb on + strand at 471.164 kb on - strand at 471.164 kb on - strand at 471.267 kb on + strand at 471.267 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.435 kb on + strand at 471.435 kb on + strand at 471.436 kb on - strand at 471.436 kb on - strand at 471.436 kb on - strand at 471.495 kb on + strand at 471.495 kb on + strand at 471.495 kb on + strand at 471.495 kb on + strand at 471.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 468,580 + -1.1 468,580 + -0.9 468,580 + -0.2 468,580 + +0.4 468,580 + +0.1 468,580 + -0.2 468,580 + -0.0 468,580 + +1.0 468,581 - +0.7 468,581 - -0.7 468,581 - +1.1 468,581 - +0.6 468,581 - -0.3 468,581 - -0.3 468,596 + +0.6 468,596 + +0.7 468,596 + -0.6 468,872 - GFF1805 0.31 -0.4 469,159 + GFF1805 0.72 -0.9 469,159 + GFF1805 0.72 -0.6 469,159 + GFF1805 0.72 +1.7 469,160 - GFF1805 0.72 -0.5 469,160 - GFF1805 0.72 +2.0 469,397 + +0.3 469,398 - +0.2 469,449 + -0.2 469,449 + +1.7 469,449 + -0.2 469,449 + -0.5 469,449 + -0.5 469,449 + +0.7 469,449 + -0.3 469,450 - -0.6 469,450 - -0.4 469,450 - +0.1 469,450 - +0.9 469,761 - GFF1806 0.30 -1.1 469,761 - GFF1806 0.30 -0.4 469,779 + GFF1806 0.31 +0.0 469,779 + GFF1806 0.31 +0.5 469,779 + GFF1806 0.31 +0.1 469,779 + GFF1806 0.31 -0.0 469,779 + GFF1806 0.31 -0.9 469,779 + GFF1806 0.31 -0.8 469,779 + GFF1806 0.31 -0.5 469,780 - GFF1806 0.31 +0.8 469,780 - GFF1806 0.31 +0.8 469,809 + GFF1806 0.33 +0.5 469,809 + GFF1806 0.33 +0.3 469,938 + GFF1806 0.43 -0.1 469,938 + GFF1806 0.43 +0.6 469,938 + GFF1806 0.43 +0.6 469,938 + GFF1806 0.43 -0.0 469,939 - GFF1806 0.43 +0.7 469,939 - GFF1806 0.43 -1.0 469,939 - GFF1806 0.43 -2.5 470,022 + GFF1806 0.49 -0.2 470,022 + GFF1806 0.49 +0.6 470,022 + GFF1806 0.49 +0.5 470,022 + GFF1806 0.49 +0.1 470,023 - GFF1806 0.49 -0.3 470,070 + GFF1806 0.53 +0.5 470,070 + GFF1806 0.53 -0.4 470,071 - GFF1806 0.53 -0.8 470,071 - GFF1806 0.53 -2.9 470,352 + GFF1806 0.74 +0.6 470,352 + GFF1806 0.74 -0.2 470,352 + GFF1806 0.74 -0.2 470,352 + GFF1806 0.74 -0.9 470,352 + GFF1806 0.74 +1.0 470,353 - GFF1806 0.74 -0.3 470,353 - GFF1806 0.74 +0.1 470,353 - GFF1806 0.74 +0.1 470,353 - GFF1806 0.74 -0.4 470,472 + GFF1806 0.82 -0.1 470,472 + GFF1806 0.82 -0.0 470,473 - GFF1806 0.83 -0.1 470,473 - GFF1806 0.83 -2.4 470,473 - GFF1806 0.83 +1.0 470,473 - GFF1806 0.83 +0.7 470,473 - GFF1806 0.83 +0.4 470,473 - GFF1806 0.83 -0.5 470,473 - GFF1806 0.83 -0.2 470,623 - +1.7 470,623 - +0.4 470,775 + GFF1807 0.14 -0.9 470,808 - GFF1807 0.42 -1.3 470,873 + +0.3 470,873 + -0.2 470,873 + -0.1 470,873 + -0.3 470,874 - +0.4 470,874 - +0.1 470,874 - -0.6 470,874 - +0.1 470,874 - +0.1 470,874 - +3.7 470,874 - +1.0 470,898 + +0.3 470,898 + -0.2 470,898 + -1.0 470,898 + -0.6 470,898 + +1.4 470,898 + +0.4 470,898 + -0.4 470,898 + -0.8 470,899 - +0.7 470,899 - -0.8 470,899 - +0.5 470,899 - +0.5 470,899 - -0.0 470,899 - -0.5 470,972 + -0.4 470,972 + -0.1 470,972 + +1.0 470,972 + +1.4 470,972 + +0.7 470,973 - +0.1 470,973 - +0.4 470,988 + +0.2 470,988 + -0.7 470,989 - -0.1 471,105 + +0.1 471,105 + -0.9 471,106 - -0.1 471,107 + -0.8 471,107 + -0.2 471,108 - -0.2 471,108 - +0.0 471,149 - -0.0 471,149 - -1.5 471,157 + +0.0 471,157 + -0.4 471,158 - -0.2 471,158 - -0.2 471,158 - +0.1 471,158 - -0.7 471,158 - -0.3 471,158 - +0.6 471,163 + -1.8 471,164 - -0.5 471,164 - -0.2 471,267 + -2.8 471,267 + -1.7 471,319 + -0.7 471,319 + -0.5 471,319 + -0.3 471,319 + -0.3 471,319 + +0.0 471,319 + -0.1 471,319 + +0.1 471,319 + -0.3 471,319 + -0.6 471,319 + +0.9 471,319 + -1.0 471,319 + -0.5 471,319 + +0.4 471,319 + +0.8 471,319 + -1.4 471,320 - -0.0 471,320 - +0.1 471,320 - +0.6 471,320 - +0.3 471,320 - -0.6 471,320 - +0.6 471,320 - -1.1 471,320 - -0.7 471,320 - +0.2 471,320 - -0.2 471,320 - -0.4 471,320 - +0.2 471,320 - +0.5 471,320 - -0.7 471,320 - -0.8 471,435 + +0.2 471,435 + +0.1 471,436 - -1.9 471,436 - -0.4 471,436 - -0.3 471,495 + -0.1 471,495 + +0.4 471,495 + -0.7 471,495 + +0.8 471,496 - -0.2
Or see this region's nucleotide sequence