Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1788 and GFF1789 are separated by 50 nucleotides GFF1789 and GFF1790 are separated by 13 nucleotides
GFF1788 - hypothetical protein, at 449,215 to 449,436
GFF1788
GFF1789 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 449,487 to 450,257
GFF1789
GFF1790 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 450,271 to 451,143
GFF1790
Position (kb) 449
450 Strain fitness (log2 ratio) -2
-1
0
1 at 448.371 kb on - strand at 448.474 kb on + strand at 448.612 kb on + strand at 448.612 kb on + strand at 448.612 kb on + strand at 448.613 kb on - strand at 448.844 kb on - strand at 448.942 kb on + strand at 448.946 kb on - strand at 448.946 kb on - strand at 449.405 kb on - strand, within GFF1788 at 449.488 kb on + strand at 449.489 kb on - strand at 449.555 kb on - strand at 449.580 kb on + strand, within GFF1789 at 449.580 kb on + strand, within GFF1789 at 449.642 kb on - strand, within GFF1789 at 449.642 kb on - strand, within GFF1789 at 449.731 kb on + strand, within GFF1789 at 449.989 kb on + strand, within GFF1789 at 449.989 kb on + strand, within GFF1789 at 450.377 kb on + strand, within GFF1790 at 450.377 kb on + strand, within GFF1790 at 450.377 kb on + strand, within GFF1790
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 448,371 - +0.3 448,474 + +1.4 448,612 + +0.6 448,612 + +1.1 448,612 + +0.1 448,613 - -0.1 448,844 - -0.1 448,942 + +0.2 448,946 - +0.2 448,946 - +1.1 449,405 - GFF1788 0.86 -0.4 449,488 + -0.1 449,489 - -0.5 449,555 - -1.0 449,580 + GFF1789 0.12 -1.9 449,580 + GFF1789 0.12 -1.4 449,642 - GFF1789 0.20 -0.1 449,642 - GFF1789 0.20 -0.5 449,731 + GFF1789 0.32 +0.4 449,989 + GFF1789 0.65 -0.9 449,989 + GFF1789 0.65 -0.3 450,377 + GFF1790 0.12 +0.3 450,377 + GFF1790 0.12 -0.1 450,377 + GFF1790 0.12 +0.1
Or see this region's nucleotide sequence