Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1604 and GFF1605 are separated by 108 nucleotides GFF1605 and GFF1606 are separated by 3 nucleotides GFF1606 and GFF1607 are separated by 92 nucleotides
GFF1604 - Prolidase (EC 3.4.13.9), at 201,731 to 202,996
GFF1604
GFF1605 - no description, at 203,105 to 203,686
GFF1605
GFF1606 - Cys-tRNA(Pro) deacylase YbaK, at 203,690 to 205,276
GFF1606
GFF1607 - D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2), at 205,369 to 206,814
GFF1607
Position (kb) 203
204
205
206 Strain fitness (log2 ratio) -1
0
1
2 at 202.851 kb on + strand, within GFF1604 at 202.988 kb on + strand at 203.023 kb on - strand at 203.045 kb on - strand at 203.075 kb on + strand at 203.114 kb on - strand at 203.114 kb on - strand at 203.263 kb on + strand, within GFF1605 at 203.264 kb on - strand, within GFF1605 at 203.584 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.636 kb on + strand at 203.710 kb on - strand at 203.710 kb on - strand at 204.313 kb on - strand, within GFF1606 at 204.541 kb on - strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.922 kb on - strand, within GFF1606 at 204.922 kb on - strand, within GFF1606 at 204.936 kb on - strand, within GFF1606 at 205.117 kb on - strand, within GFF1606 at 205.335 kb on - strand at 205.335 kb on - strand at 205.358 kb on - strand at 205.840 kb on + strand, within GFF1607 at 206.055 kb on + strand, within GFF1607 at 206.087 kb on - strand, within GFF1607 at 206.123 kb on - strand, within GFF1607 at 206.123 kb on - strand, within GFF1607 at 206.209 kb on + strand, within GFF1607 at 206.210 kb on - strand, within GFF1607
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 202,851 + GFF1604 0.88 -0.0 202,988 + -0.1 203,023 - -0.3 203,045 - -0.5 203,075 + -0.3 203,114 - -0.4 203,114 - -0.2 203,263 + GFF1605 0.27 -0.1 203,264 - GFF1605 0.27 -0.1 203,584 + GFF1605 0.82 +1.7 203,612 + GFF1605 0.87 +0.1 203,612 + GFF1605 0.87 +0.6 203,612 + GFF1605 0.87 +0.7 203,612 + GFF1605 0.87 -0.7 203,612 + GFF1605 0.87 +0.3 203,612 + GFF1605 0.87 +0.3 203,613 - GFF1605 0.87 +0.4 203,613 - GFF1605 0.87 +0.6 203,613 - GFF1605 0.87 +0.5 203,636 + -0.3 203,710 - +0.1 203,710 - +1.3 204,313 - GFF1606 0.39 -0.3 204,541 - GFF1606 0.54 -0.1 204,921 + GFF1606 0.78 +0.1 204,921 + GFF1606 0.78 -0.1 204,921 + GFF1606 0.78 +0.5 204,921 + GFF1606 0.78 -0.4 204,921 + GFF1606 0.78 +1.0 204,921 + GFF1606 0.78 -0.4 204,921 + GFF1606 0.78 -0.2 204,922 - GFF1606 0.78 +0.9 204,922 - GFF1606 0.78 +0.4 204,936 - GFF1606 0.79 -0.1 205,117 - GFF1606 0.90 -0.3 205,335 - +1.1 205,335 - -0.1 205,358 - -0.5 205,840 + GFF1607 0.33 -0.7 206,055 + GFF1607 0.47 -0.4 206,087 - GFF1607 0.50 -0.5 206,123 - GFF1607 0.52 +2.7 206,123 - GFF1607 0.52 +0.9 206,209 + GFF1607 0.58 +0.9 206,210 - GFF1607 0.58 -0.2
Or see this region's nucleotide sequence