Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1488 and GFF1489 overlap by 4 nucleotides GFF1489 and GFF1490 are separated by 3 nucleotides GFF1490 and GFF1491 are separated by 35 nucleotides
GFF1488 - Tetrapartite efflux system, membrane fusion component FusE-like, at 80,915 to 81,913
GFF1488
GFF1489 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 81,910 to 83,373
GFF1489
GFF1490 - Transcriptional regulator, LysR family, at 83,377 to 84,273
GFF1490
GFF1491 - Gluconolactonase, at 84,309 to 85,241
GFF1491
Position (kb) 81
82
83
84 Strain fitness (log2 ratio) -1
0
1 at 81.510 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.834 kb on + strand at 81.835 kb on - strand at 81.835 kb on - strand at 81.905 kb on - strand at 82.105 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.301 kb on - strand, within GFF1489 at 82.324 kb on + strand, within GFF1489 at 82.348 kb on + strand, within GFF1489 at 82.471 kb on + strand, within GFF1489 at 82.472 kb on - strand, within GFF1489 at 82.951 kb on + strand, within GFF1489 at 82.952 kb on - strand, within GFF1489 at 83.191 kb on + strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.371 kb on + strand at 83.887 kb on + strand, within GFF1490 at 83.950 kb on + strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.008 kb on - strand, within GFF1490 at 84.102 kb on - strand, within GFF1490 at 84.102 kb on - strand, within GFF1490 at 84.187 kb on + strand at 84.187 kb on + strand at 84.188 kb on - strand at 84.188 kb on - strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 81,510 - GFF1488 0.60 +0.9 81,561 - GFF1488 0.65 -0.2 81,561 - GFF1488 0.65 -0.4 81,834 + +0.1 81,835 - +0.2 81,835 - -0.4 81,905 - -1.0 82,105 + GFF1489 0.13 +0.4 82,300 + GFF1489 0.27 +0.2 82,300 + GFF1489 0.27 -0.2 82,300 + GFF1489 0.27 +0.2 82,301 - GFF1489 0.27 -0.1 82,324 + GFF1489 0.28 +0.3 82,348 + GFF1489 0.30 +0.0 82,471 + GFF1489 0.38 +0.1 82,472 - GFF1489 0.38 +1.4 82,951 + GFF1489 0.71 +0.4 82,952 - GFF1489 0.71 +1.2 83,191 + GFF1489 0.88 -0.0 83,192 - GFF1489 0.88 -0.6 83,192 - GFF1489 0.88 -0.0 83,192 - GFF1489 0.88 -0.3 83,192 - GFF1489 0.88 -0.2 83,192 - GFF1489 0.88 +0.1 83,371 + +0.0 83,887 + GFF1490 0.57 +1.3 83,950 + GFF1490 0.64 +0.7 83,951 - GFF1490 0.64 +0.6 83,951 - GFF1490 0.64 -0.2 83,951 - GFF1490 0.64 +0.3 84,007 + GFF1490 0.70 -0.5 84,007 + GFF1490 0.70 -0.4 84,007 + GFF1490 0.70 +0.6 84,008 - GFF1490 0.70 -0.4 84,102 - GFF1490 0.81 +1.4 84,102 - GFF1490 0.81 -0.6 84,187 + +0.3 84,187 + -0.3 84,188 - -0.3 84,188 - +0.4 84,310 + -1.7 84,310 + -0.4 84,311 - +0.3
Or see this region's nucleotide sequence