Strain Fitness in Variovorax sp. SCN45 around GFF1411

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1410 and GFF1411 are separated by 381 nucleotides GFF1410 - hypothetical protein, at 756,898 to 757,587 GFF1410 GFF1411 - Two-component transcriptional response regulator, LuxR family, at 757,969 to 758,763 GFF1411 Position (kb) 757 758 759Strain fitness (log2 ratio) -2 -1 0 1 2at 757.079 kb on + strand, within GFF1410at 757.079 kb on + strand, within GFF1410at 757.144 kb on - strand, within GFF1410at 757.144 kb on - strand, within GFF1410at 757.197 kb on + strand, within GFF1410at 757.197 kb on + strand, within GFF1410at 757.198 kb on - strand, within GFF1410at 757.198 kb on - strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.430 kb on + strand, within GFF1410at 757.430 kb on + strand, within GFF1410at 757.430 kb on + strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.647 kb on - strandat 757.739 kb on - strandat 757.750 kb on - strandat 757.750 kb on - strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.828 kb on - strandat 757.878 kb on + strandat 757.892 kb on + strandat 757.892 kb on + strandat 757.892 kb on + strandat 757.893 kb on - strandat 757.917 kb on + strandat 757.920 kb on + strandat 757.928 kb on - strandat 757.955 kb on - strandat 758.016 kb on + strandat 758.023 kb on + strandat 758.024 kb on - strandat 758.024 kb on - strandat 758.413 kb on + strand, within GFF1411at 758.413 kb on + strand, within GFF1411at 758.414 kb on - strand, within GFF1411at 758.414 kb on - strand, within GFF1411at 758.414 kb on - strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.612 kb on + strand, within GFF1411at 758.612 kb on + strand, within GFF1411at 758.612 kb on + strand, within GFF1411at 758.613 kb on - strand, within GFF1411at 758.613 kb on - strand, within GFF1411at 758.623 kb on + strand, within GFF1411at 758.623 kb on + strand, within GFF1411at 758.623 kb on + strand, within GFF1411at 758.623 kb on + strand, within GFF1411at 758.623 kb on + strand, within GFF1411at 758.624 kb on - strand, within GFF1411at 758.624 kb on - strand, within GFF1411at 758.624 kb on - strand, within GFF1411at 758.624 kb on - strand, within GFF1411at 758.624 kb on - strand, within GFF1411at 758.695 kb on + strandat 758.695 kb on + strandat 758.695 kb on + strandat 758.695 kb on + strandat 758.695 kb on + strandat 758.695 kb on + strandat 758.695 kb on + strandat 758.695 kb on + strandat 758.696 kb on - strandat 758.696 kb on - strandat 758.696 kb on - strandat 758.778 kb on - strandat 758.778 kb on - strandat 758.778 kb on - strandat 758.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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757,079 + GFF1410 0.26 +0.5
757,079 + GFF1410 0.26 -2.2
757,144 - GFF1410 0.36 -0.2
757,144 - GFF1410 0.36 -0.4
757,197 + GFF1410 0.43 +0.7
757,197 + GFF1410 0.43 -0.0
757,198 - GFF1410 0.43 -2.0
757,198 - GFF1410 0.43 -1.0
757,220 + GFF1410 0.47 -0.9
757,220 + GFF1410 0.47 -1.0
757,220 + GFF1410 0.47 +0.2
757,220 + GFF1410 0.47 -0.5
757,220 + GFF1410 0.47 -0.8
757,220 + GFF1410 0.47 -0.4
757,220 + GFF1410 0.47 -0.3
757,221 - GFF1410 0.47 +0.0
757,221 - GFF1410 0.47 +0.3
757,221 - GFF1410 0.47 -0.8
757,221 - GFF1410 0.47 -0.2
757,221 - GFF1410 0.47 -0.2
757,221 - GFF1410 0.47 -0.6
757,221 - GFF1410 0.47 -0.2
757,221 - GFF1410 0.47 +0.6
757,430 + GFF1410 0.77 -0.7
757,430 + GFF1410 0.77 -0.7
757,430 + GFF1410 0.77 +0.2
757,431 - GFF1410 0.77 -0.6
757,431 - GFF1410 0.77 -0.7
757,431 - GFF1410 0.77 -1.2
757,431 - GFF1410 0.77 -0.2
757,431 - GFF1410 0.77 +0.7
757,431 - GFF1410 0.77 -0.6
757,431 - GFF1410 0.77 +0.5
757,647 - +0.6
757,739 - -0.3
757,750 - +0.5
757,750 - +0.3
757,788 + -0.3
757,788 + +0.2
757,788 + -0.0
757,788 + +0.1
757,788 + +0.4
757,788 + +0.1
757,788 + +0.0
757,788 + -0.3
757,788 + -0.6
757,788 + -0.4
757,788 + -0.2
757,788 + -0.8
757,788 + +0.2
757,788 + -0.3
757,788 + -0.0
757,788 + -0.7
757,788 + -0.2
757,788 + +0.3
757,788 + +0.1
757,789 - -0.2
757,789 - -0.4
757,789 - -0.1
757,789 - -1.5
757,789 - +0.4
757,789 - +0.3
757,789 - -1.1
757,789 - -0.9
757,789 - +0.1
757,789 - -0.1
757,789 - +0.5
757,828 - -1.7
757,878 + +2.0
757,892 + +0.6
757,892 + +0.3
757,892 + +0.2
757,893 - -0.6
757,917 + -0.1
757,920 + -1.2
757,928 - -0.7
757,955 - -0.1
758,016 + -0.2
758,023 + +0.0
758,024 - -0.3
758,024 - +0.2
758,413 + GFF1411 0.56 -0.7
758,413 + GFF1411 0.56 -1.0
758,414 - GFF1411 0.56 +0.2
758,414 - GFF1411 0.56 -0.2
758,414 - GFF1411 0.56 +0.2
758,443 + GFF1411 0.60 -1.0
758,443 + GFF1411 0.60 -0.7
758,443 + GFF1411 0.60 +0.3
758,443 + GFF1411 0.60 -0.5
758,443 + GFF1411 0.60 -1.1
758,443 + GFF1411 0.60 -0.7
758,443 + GFF1411 0.60 -0.7
758,443 + GFF1411 0.60 -0.7
758,443 + GFF1411 0.60 -0.2
758,444 - GFF1411 0.60 +0.2
758,444 - GFF1411 0.60 -0.1
758,444 - GFF1411 0.60 -1.7
758,444 - GFF1411 0.60 +0.6
758,444 - GFF1411 0.60 -0.5
758,444 - GFF1411 0.60 -0.0
758,444 - GFF1411 0.60 +0.1
758,444 - GFF1411 0.60 -0.1
758,444 - GFF1411 0.60 +0.3
758,444 - GFF1411 0.60 +0.7
758,444 - GFF1411 0.60 +0.2
758,444 - GFF1411 0.60 -0.4
758,612 + GFF1411 0.81 +0.8
758,612 + GFF1411 0.81 -1.2
758,612 + GFF1411 0.81 -0.1
758,613 - GFF1411 0.81 -0.5
758,613 - GFF1411 0.81 -0.9
758,623 + GFF1411 0.82 -0.4
758,623 + GFF1411 0.82 -0.3
758,623 + GFF1411 0.82 -0.9
758,623 + GFF1411 0.82 -0.0
758,623 + GFF1411 0.82 +0.0
758,624 - GFF1411 0.82 +0.1
758,624 - GFF1411 0.82 -1.4
758,624 - GFF1411 0.82 -0.3
758,624 - GFF1411 0.82 -0.3
758,624 - GFF1411 0.82 -0.1
758,695 + +0.3
758,695 + +2.0
758,695 + -0.7
758,695 + +0.1
758,695 + -0.7
758,695 + +1.4
758,695 + -1.5
758,695 + +0.7
758,696 - -1.7
758,696 - -0.2
758,696 - -0.5
758,778 - -0.3
758,778 - -0.6
758,778 - -0.4
758,778 - +1.1

Or see this region's nucleotide sequence