Strain Fitness in Variovorax sp. SCN45 around GFF1276

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1275 and GFF1276 are separated by 72 nucleotidesGFF1276 and GFF1277 are separated by 22 nucleotides GFF1275 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 604,908 to 605,840 GFF1275 GFF1276 - Sarcosine oxidase, at 605,913 to 607,136 GFF1276 GFF1277 - Alkanesulfonates-binding protein, at 607,159 to 608,130 GFF1277 Position (kb) 605 606 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 604.939 kb on + strandat 604.939 kb on + strandat 604.939 kb on + strandat 604.939 kb on + strandat 604.939 kb on + strandat 604.939 kb on + strandat 604.939 kb on + strandat 604.939 kb on + strandat 604.940 kb on - strandat 604.940 kb on - strandat 604.957 kb on + strandat 604.957 kb on + strandat 604.957 kb on + strandat 604.957 kb on + strandat 604.957 kb on + strandat 604.957 kb on + strandat 604.957 kb on + strandat 604.958 kb on - strandat 604.958 kb on - strandat 604.958 kb on - strandat 604.958 kb on - strandat 604.958 kb on - strandat 604.958 kb on - strandat 604.958 kb on - strandat 604.958 kb on - strandat 604.958 kb on - strandat 605.068 kb on + strand, within GFF1275at 605.068 kb on + strand, within GFF1275at 605.068 kb on + strand, within GFF1275at 605.068 kb on + strand, within GFF1275at 605.068 kb on + strand, within GFF1275at 605.068 kb on + strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.069 kb on - strand, within GFF1275at 605.399 kb on - strand, within GFF1275at 605.466 kb on - strand, within GFF1275at 605.605 kb on + strand, within GFF1275at 605.605 kb on + strand, within GFF1275at 605.605 kb on + strand, within GFF1275at 605.605 kb on + strand, within GFF1275at 605.606 kb on - strand, within GFF1275at 605.606 kb on - strand, within GFF1275at 605.606 kb on - strand, within GFF1275at 605.606 kb on - strand, within GFF1275at 605.636 kb on - strand, within GFF1275at 605.800 kb on + strandat 605.801 kb on - strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.985 kb on + strandat 605.986 kb on - strandat 605.986 kb on - strandat 605.986 kb on - strandat 605.986 kb on - strandat 605.986 kb on - strandat 606.118 kb on + strand, within GFF1276at 606.118 kb on + strand, within GFF1276at 606.118 kb on + strand, within GFF1276at 606.118 kb on + strand, within GFF1276at 606.118 kb on + strand, within GFF1276at 606.118 kb on + strand, within GFF1276at 606.118 kb on + strand, within GFF1276at 606.118 kb on + strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.119 kb on - strand, within GFF1276at 606.188 kb on - strand, within GFF1276at 606.188 kb on - strand, within GFF1276at 606.188 kb on - strand, within GFF1276at 606.188 kb on - strand, within GFF1276at 606.188 kb on - strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.253 kb on + strand, within GFF1276at 606.254 kb on - strand, within GFF1276at 606.254 kb on - strand, within GFF1276at 606.254 kb on - strand, within GFF1276at 606.254 kb on - strand, within GFF1276at 606.254 kb on - strand, within GFF1276at 606.254 kb on - strand, within GFF1276at 606.254 kb on - strand, within GFF1276at 606.309 kb on + strand, within GFF1276at 606.310 kb on + strand, within GFF1276at 606.310 kb on + strand, within GFF1276at 606.310 kb on + strand, within GFF1276at 606.310 kb on + strand, within GFF1276at 606.310 kb on + strand, within GFF1276at 606.311 kb on - strand, within GFF1276at 606.311 kb on - strand, within GFF1276at 606.311 kb on - strand, within GFF1276at 606.311 kb on - strand, within GFF1276at 606.311 kb on - strand, within GFF1276at 606.311 kb on - strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.316 kb on + strand, within GFF1276at 606.317 kb on - strand, within GFF1276at 606.317 kb on - strand, within GFF1276at 606.317 kb on - strand, within GFF1276at 606.317 kb on - strand, within GFF1276at 606.692 kb on - strand, within GFF1276at 606.946 kb on + strand, within GFF1276at 606.946 kb on + strand, within GFF1276at 606.946 kb on + strand, within GFF1276at 606.946 kb on + strand, within GFF1276at 606.946 kb on + strand, within GFF1276at 606.946 kb on + strand, within GFF1276at 606.947 kb on - strand, within GFF1276at 606.947 kb on - strand, within GFF1276at 606.947 kb on - strand, within GFF1276at 607.069 kb on + strandat 607.070 kb on - strandat 607.118 kb on - strandat 607.118 kb on - strandat 607.118 kb on - strandat 607.289 kb on + strand, within GFF1277at 607.290 kb on - strand, within GFF1277at 607.290 kb on - strand, within GFF1277at 607.469 kb on + strand, within GFF1277at 607.469 kb on + strand, within GFF1277at 607.470 kb on - strand, within GFF1277at 607.470 kb on - strand, within GFF1277at 607.587 kb on - strand, within GFF1277at 607.587 kb on - strand, within GFF1277at 607.619 kb on + strand, within GFF1277at 607.619 kb on + strand, within GFF1277at 607.619 kb on + strand, within GFF1277at 607.620 kb on - strand, within GFF1277at 607.620 kb on - strand, within GFF1277at 607.620 kb on - strand, within GFF1277at 607.679 kb on + strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.692 kb on - strand, within GFF1277at 607.692 kb on - strand, within GFF1277at 607.805 kb on + strand, within GFF1277at 607.806 kb on - strand, within GFF1277at 607.806 kb on - strand, within GFF1277at 608.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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604,939 + +0.7
604,939 + -0.5
604,939 + +0.7
604,939 + +0.3
604,939 + +0.0
604,939 + +0.1
604,939 + -0.7
604,939 + +0.1
604,940 - +0.6
604,940 - -1.3
604,957 + -0.3
604,957 + +0.5
604,957 + -0.2
604,957 + +0.3
604,957 + +0.1
604,957 + -0.1
604,957 + -1.5
604,958 - -0.6
604,958 - -0.6
604,958 - -2.3
604,958 - -0.1
604,958 - -0.1
604,958 - -0.5
604,958 - -0.1
604,958 - +0.2
604,958 - -0.6
605,068 + GFF1275 0.17 -0.6
605,068 + GFF1275 0.17 -0.3
605,068 + GFF1275 0.17 -0.3
605,068 + GFF1275 0.17 -0.9
605,068 + GFF1275 0.17 +1.3
605,068 + GFF1275 0.17 -0.0
605,069 - GFF1275 0.17 -0.1
605,069 - GFF1275 0.17 +0.2
605,069 - GFF1275 0.17 -0.9
605,069 - GFF1275 0.17 +0.6
605,069 - GFF1275 0.17 -1.2
605,069 - GFF1275 0.17 +0.0
605,069 - GFF1275 0.17 +0.0
605,069 - GFF1275 0.17 +0.6
605,069 - GFF1275 0.17 +0.2
605,069 - GFF1275 0.17 +1.0
605,399 - GFF1275 0.53 +0.2
605,466 - GFF1275 0.60 -0.5
605,605 + GFF1275 0.75 +0.1
605,605 + GFF1275 0.75 +0.3
605,605 + GFF1275 0.75 -0.8
605,605 + GFF1275 0.75 -0.8
605,606 - GFF1275 0.75 -0.8
605,606 - GFF1275 0.75 -0.5
605,606 - GFF1275 0.75 +0.4
605,606 - GFF1275 0.75 -0.9
605,636 - GFF1275 0.78 +0.7
605,800 + -0.1
605,801 - +0.6
605,985 + +0.2
605,985 + +0.3
605,985 + -0.5
605,985 + -0.4
605,985 + +0.2
605,985 + -0.1
605,985 + -0.5
605,985 + +0.1
605,985 + +1.1
605,986 - -0.2
605,986 - -0.3
605,986 - +0.3
605,986 - -0.4
605,986 - +0.5
606,118 + GFF1276 0.17 +0.3
606,118 + GFF1276 0.17 -1.9
606,118 + GFF1276 0.17 +0.2
606,118 + GFF1276 0.17 -1.4
606,118 + GFF1276 0.17 +0.7
606,118 + GFF1276 0.17 +0.7
606,118 + GFF1276 0.17 -0.5
606,118 + GFF1276 0.17 -0.9
606,119 - GFF1276 0.17 -1.3
606,119 - GFF1276 0.17 -0.3
606,119 - GFF1276 0.17 -0.6
606,119 - GFF1276 0.17 +0.1
606,119 - GFF1276 0.17 -0.3
606,119 - GFF1276 0.17 -0.5
606,119 - GFF1276 0.17 +0.3
606,119 - GFF1276 0.17 -0.9
606,119 - GFF1276 0.17 -0.6
606,119 - GFF1276 0.17 -0.0
606,119 - GFF1276 0.17 -1.2
606,188 - GFF1276 0.22 +0.3
606,188 - GFF1276 0.22 -0.9
606,188 - GFF1276 0.22 +0.3
606,188 - GFF1276 0.22 -0.3
606,188 - GFF1276 0.22 -1.7
606,253 + GFF1276 0.28 -0.1
606,253 + GFF1276 0.28 +0.1
606,253 + GFF1276 0.28 +0.3
606,253 + GFF1276 0.28 -0.1
606,253 + GFF1276 0.28 -0.6
606,253 + GFF1276 0.28 +0.9
606,253 + GFF1276 0.28 -0.9
606,253 + GFF1276 0.28 -0.3
606,254 - GFF1276 0.28 -1.7
606,254 - GFF1276 0.28 -1.7
606,254 - GFF1276 0.28 -0.4
606,254 - GFF1276 0.28 +1.3
606,254 - GFF1276 0.28 +1.0
606,254 - GFF1276 0.28 -0.5
606,254 - GFF1276 0.28 +0.4
606,309 + GFF1276 0.32 +0.1
606,310 + GFF1276 0.32 +1.3
606,310 + GFF1276 0.32 -1.6
606,310 + GFF1276 0.32 +0.7
606,310 + GFF1276 0.32 +0.3
606,310 + GFF1276 0.32 -0.5
606,311 - GFF1276 0.33 -0.5
606,311 - GFF1276 0.33 +0.1
606,311 - GFF1276 0.33 -1.1
606,311 - GFF1276 0.33 +0.0
606,311 - GFF1276 0.33 -0.7
606,311 - GFF1276 0.33 -0.6
606,316 + GFF1276 0.33 +0.3
606,316 + GFF1276 0.33 +0.3
606,316 + GFF1276 0.33 -1.2
606,316 + GFF1276 0.33 +0.0
606,316 + GFF1276 0.33 -0.2
606,316 + GFF1276 0.33 -0.1
606,316 + GFF1276 0.33 +0.0
606,316 + GFF1276 0.33 +0.0
606,317 - GFF1276 0.33 +0.5
606,317 - GFF1276 0.33 -0.2
606,317 - GFF1276 0.33 -1.2
606,317 - GFF1276 0.33 +1.3
606,692 - GFF1276 0.64 +0.2
606,946 + GFF1276 0.84 -0.9
606,946 + GFF1276 0.84 +0.1
606,946 + GFF1276 0.84 -0.2
606,946 + GFF1276 0.84 -0.5
606,946 + GFF1276 0.84 +0.9
606,946 + GFF1276 0.84 -1.3
606,947 - GFF1276 0.84 -0.9
606,947 - GFF1276 0.84 -0.9
606,947 - GFF1276 0.84 +0.1
607,069 + +0.3
607,070 - +0.5
607,118 - -0.2
607,118 - -0.3
607,118 - -0.2
607,289 + GFF1277 0.13 -0.1
607,290 - GFF1277 0.13 +0.1
607,290 - GFF1277 0.13 +2.3
607,469 + GFF1277 0.32 +0.3
607,469 + GFF1277 0.32 +0.2
607,470 - GFF1277 0.32 -0.9
607,470 - GFF1277 0.32 -0.3
607,587 - GFF1277 0.44 +0.0
607,587 - GFF1277 0.44 -0.8
607,619 + GFF1277 0.47 -0.1
607,619 + GFF1277 0.47 +2.3
607,619 + GFF1277 0.47 +1.3
607,620 - GFF1277 0.47 -0.1
607,620 - GFF1277 0.47 +0.0
607,620 - GFF1277 0.47 -0.1
607,679 + GFF1277 0.53 -0.4
607,680 - GFF1277 0.54 -0.0
607,680 - GFF1277 0.54 -0.4
607,680 - GFF1277 0.54 +0.0
607,680 - GFF1277 0.54 -0.4
607,680 - GFF1277 0.54 +1.0
607,680 - GFF1277 0.54 +0.5
607,680 - GFF1277 0.54 -0.4
607,692 - GFF1277 0.55 -1.3
607,692 - GFF1277 0.55 +0.1
607,805 + GFF1277 0.66 +0.8
607,806 - GFF1277 0.67 -1.9
607,806 - GFF1277 0.67 -0.2
608,061 + +0.7

Or see this region's nucleotide sequence