Strain Fitness in Variovorax sp. SCN45 around GFF1003

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1002 and GFF1003 are separated by 17 nucleotidesGFF1003 and GFF1004 are separated by 16 nucleotidesGFF1004 and GFF1005 are separated by 44 nucleotides GFF1002 - HflK protein, at 321,509 to 322,882 GFF1002 GFF1003 - HflC protein, at 322,900 to 323,799 GFF1003 GFF1004 - Putative inner membrane protein YjeT (clustered with HflC), at 323,816 to 324,004 GFF1004 GFF1005 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 324,049 to 325,209 GFF1005 Position (kb) 322 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 321.938 kb on + strand, within GFF1002at 321.939 kb on - strand, within GFF1002at 321.980 kb on + strand, within GFF1002at 321.981 kb on - strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.131 kb on - strand, within GFF1002at 322.160 kb on + strand, within GFF1002at 322.160 kb on + strand, within GFF1002at 322.160 kb on + strand, within GFF1002at 322.161 kb on - strand, within GFF1002at 322.161 kb on - strand, within GFF1002at 322.161 kb on - strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.454 kb on + strand, within GFF1002at 322.455 kb on - strand, within GFF1002at 322.455 kb on - strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.520 kb on + strand, within GFF1002at 322.521 kb on - strand, within GFF1002at 322.521 kb on - strand, within GFF1002at 322.521 kb on - strand, within GFF1002at 322.521 kb on - strand, within GFF1002at 322.586 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.622 kb on + strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.623 kb on - strand, within GFF1002at 322.646 kb on + strand, within GFF1002at 322.646 kb on + strand, within GFF1002at 322.646 kb on + strand, within GFF1002at 322.646 kb on + strand, within GFF1002at 322.647 kb on - strand, within GFF1002at 322.647 kb on - strand, within GFF1002at 322.647 kb on - strand, within GFF1002at 322.647 kb on - strand, within GFF1002at 322.647 kb on - strand, within GFF1002at 322.700 kb on + strand, within GFF1002at 322.700 kb on + strand, within GFF1002at 322.700 kb on + strand, within GFF1002at 322.700 kb on + strand, within GFF1002at 322.700 kb on + strand, within GFF1002at 322.700 kb on + strand, within GFF1002at 322.701 kb on - strand, within GFF1002at 322.701 kb on - strand, within GFF1002at 322.701 kb on - strand, within GFF1002at 322.701 kb on - strand, within GFF1002at 322.701 kb on - strand, within GFF1002at 322.701 kb on - strand, within GFF1002at 322.891 kb on + strandat 322.891 kb on + strandat 322.891 kb on + strandat 322.891 kb on + strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.892 kb on - strandat 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 322.999 kb on + strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.000 kb on - strand, within GFF1003at 323.080 kb on + strand, within GFF1003at 323.080 kb on + strand, within GFF1003at 323.080 kb on + strand, within GFF1003at 323.080 kb on + strand, within GFF1003at 323.080 kb on + strand, within GFF1003at 323.080 kb on + strand, within GFF1003at 323.080 kb on + strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.081 kb on - strand, within GFF1003at 323.167 kb on + strand, within GFF1003at 323.167 kb on + strand, within GFF1003at 323.167 kb on + strand, within GFF1003at 323.167 kb on + strand, within GFF1003at 323.167 kb on + strand, within GFF1003at 323.167 kb on + strand, within GFF1003at 323.167 kb on + strand, within GFF1003at 323.168 kb on - strand, within GFF1003at 323.168 kb on - strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.200 kb on + strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.201 kb on - strand, within GFF1003at 323.425 kb on + strand, within GFF1003at 323.425 kb on + strand, within GFF1003at 323.425 kb on + strand, within GFF1003at 323.425 kb on + strand, within GFF1003at 323.425 kb on + strand, within GFF1003at 323.426 kb on - strand, within GFF1003at 323.426 kb on - strand, within GFF1003at 323.426 kb on - strand, within GFF1003at 323.426 kb on - strand, within GFF1003at 323.452 kb on + strand, within GFF1003at 323.453 kb on - strand, within GFF1003at 323.453 kb on - strand, within GFF1003at 323.453 kb on - strand, within GFF1003at 323.576 kb on - strand, within GFF1003at 323.629 kb on + strand, within GFF1003at 323.630 kb on - strand, within GFF1003at 323.630 kb on - strand, within GFF1003at 323.630 kb on - strand, within GFF1003at 323.671 kb on + strand, within GFF1003at 323.672 kb on - strand, within GFF1003at 323.672 kb on - strand, within GFF1003at 323.672 kb on - strand, within GFF1003at 323.689 kb on + strand, within GFF1003at 323.689 kb on + strand, within GFF1003at 323.689 kb on + strand, within GFF1003at 323.689 kb on + strand, within GFF1003at 323.689 kb on + strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.690 kb on - strand, within GFF1003at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.962 kb on + strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 323.963 kb on - strand, within GFF1004at 324.016 kb on + strandat 324.017 kb on - strandat 324.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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321,938 + GFF1002 0.31 -2.4
321,939 - GFF1002 0.31 -0.3
321,980 + GFF1002 0.34 -0.9
321,981 - GFF1002 0.34 -0.2
322,130 + GFF1002 0.45 -0.3
322,130 + GFF1002 0.45 -1.1
322,130 + GFF1002 0.45 -1.0
322,130 + GFF1002 0.45 -0.5
322,131 - GFF1002 0.45 -1.2
322,160 + GFF1002 0.47 -0.4
322,160 + GFF1002 0.47 -0.1
322,160 + GFF1002 0.47 +1.0
322,161 - GFF1002 0.47 -0.4
322,161 - GFF1002 0.47 -1.3
322,161 - GFF1002 0.47 -1.2
322,316 + GFF1002 0.59 +0.4
322,316 + GFF1002 0.59 -1.0
322,316 + GFF1002 0.59 -0.7
322,316 + GFF1002 0.59 +1.4
322,316 + GFF1002 0.59 -1.6
322,316 + GFF1002 0.59 +0.4
322,316 + GFF1002 0.59 +0.1
322,317 - GFF1002 0.59 -0.3
322,317 - GFF1002 0.59 +1.0
322,317 - GFF1002 0.59 -0.5
322,317 - GFF1002 0.59 -1.1
322,317 - GFF1002 0.59 +0.2
322,317 - GFF1002 0.59 +0.1
322,454 + GFF1002 0.69 -0.9
322,455 - GFF1002 0.69 +1.4
322,455 - GFF1002 0.69 -0.5
322,520 + GFF1002 0.74 -0.6
322,520 + GFF1002 0.74 +0.4
322,520 + GFF1002 0.74 -0.5
322,520 + GFF1002 0.74 +0.4
322,520 + GFF1002 0.74 -1.2
322,520 + GFF1002 0.74 +0.2
322,520 + GFF1002 0.74 -0.2
322,520 + GFF1002 0.74 -0.9
322,520 + GFF1002 0.74 +0.2
322,520 + GFF1002 0.74 +0.1
322,521 - GFF1002 0.74 -0.1
322,521 - GFF1002 0.74 -0.9
322,521 - GFF1002 0.74 -0.8
322,521 - GFF1002 0.74 -1.5
322,586 + GFF1002 0.78 -0.4
322,622 + GFF1002 0.81 -0.2
322,622 + GFF1002 0.81 -1.3
322,622 + GFF1002 0.81 -1.6
322,622 + GFF1002 0.81 -1.4
322,622 + GFF1002 0.81 +1.4
322,622 + GFF1002 0.81 -0.8
322,622 + GFF1002 0.81 -1.2
322,622 + GFF1002 0.81 -1.4
322,622 + GFF1002 0.81 -2.5
322,622 + GFF1002 0.81 -1.2
322,622 + GFF1002 0.81 +0.5
322,622 + GFF1002 0.81 -2.4
322,622 + GFF1002 0.81 -1.3
322,623 - GFF1002 0.81 -0.4
322,623 - GFF1002 0.81 -0.4
322,623 - GFF1002 0.81 -1.0
322,623 - GFF1002 0.81 +1.4
322,623 - GFF1002 0.81 -0.7
322,623 - GFF1002 0.81 +0.3
322,623 - GFF1002 0.81 -0.9
322,623 - GFF1002 0.81 +0.1
322,623 - GFF1002 0.81 -0.2
322,623 - GFF1002 0.81 +0.2
322,623 - GFF1002 0.81 -0.5
322,623 - GFF1002 0.81 -2.7
322,646 + GFF1002 0.83 +0.0
322,646 + GFF1002 0.83 +1.4
322,646 + GFF1002 0.83 -0.6
322,646 + GFF1002 0.83 -0.4
322,647 - GFF1002 0.83 -1.0
322,647 - GFF1002 0.83 +0.2
322,647 - GFF1002 0.83 -0.6
322,647 - GFF1002 0.83 -0.1
322,647 - GFF1002 0.83 +0.4
322,700 + GFF1002 0.87 -0.3
322,700 + GFF1002 0.87 -0.8
322,700 + GFF1002 0.87 +1.0
322,700 + GFF1002 0.87 -1.9
322,700 + GFF1002 0.87 -0.4
322,700 + GFF1002 0.87 -0.9
322,701 - GFF1002 0.87 +0.9
322,701 - GFF1002 0.87 -1.9
322,701 - GFF1002 0.87 -1.5
322,701 - GFF1002 0.87 -0.6
322,701 - GFF1002 0.87 -1.4
322,701 - GFF1002 0.87 -1.0
322,891 + -0.5
322,891 + -0.6
322,891 + +0.2
322,891 + -0.7
322,892 - -0.9
322,892 - -0.5
322,892 - +0.8
322,892 - -0.2
322,892 - +0.6
322,892 - +0.1
322,892 - -0.9
322,892 - -1.2
322,892 - +0.3
322,892 - -0.5
322,892 - -0.5
322,999 + GFF1003 0.11 -2.1
322,999 + GFF1003 0.11 +0.1
322,999 + GFF1003 0.11 +0.5
322,999 + GFF1003 0.11 -0.6
322,999 + GFF1003 0.11 -0.9
322,999 + GFF1003 0.11 -1.4
322,999 + GFF1003 0.11 +0.1
322,999 + GFF1003 0.11 -1.4
322,999 + GFF1003 0.11 -1.6
322,999 + GFF1003 0.11 -0.2
322,999 + GFF1003 0.11 -0.4
322,999 + GFF1003 0.11 -1.4
322,999 + GFF1003 0.11 -1.1
323,000 - GFF1003 0.11 -0.2
323,000 - GFF1003 0.11 -1.6
323,000 - GFF1003 0.11 -0.8
323,000 - GFF1003 0.11 +0.8
323,000 - GFF1003 0.11 -1.6
323,000 - GFF1003 0.11 -1.1
323,000 - GFF1003 0.11 -0.6
323,000 - GFF1003 0.11 +0.2
323,000 - GFF1003 0.11 +0.4
323,000 - GFF1003 0.11 +2.4
323,080 + GFF1003 0.20 -1.0
323,080 + GFF1003 0.20 +0.4
323,080 + GFF1003 0.20 -1.1
323,080 + GFF1003 0.20 -0.6
323,080 + GFF1003 0.20 -0.0
323,080 + GFF1003 0.20 -2.2
323,080 + GFF1003 0.20 +0.6
323,081 - GFF1003 0.20 -0.8
323,081 - GFF1003 0.20 -1.4
323,081 - GFF1003 0.20 -0.0
323,081 - GFF1003 0.20 -1.2
323,081 - GFF1003 0.20 -1.2
323,081 - GFF1003 0.20 -2.3
323,081 - GFF1003 0.20 -0.8
323,081 - GFF1003 0.20 -2.3
323,081 - GFF1003 0.20 -0.5
323,167 + GFF1003 0.30 +0.3
323,167 + GFF1003 0.30 +0.0
323,167 + GFF1003 0.30 +0.7
323,167 + GFF1003 0.30 +0.1
323,167 + GFF1003 0.30 -0.7
323,167 + GFF1003 0.30 -2.3
323,167 + GFF1003 0.30 -0.1
323,168 - GFF1003 0.30 -1.3
323,168 - GFF1003 0.30 -0.1
323,200 + GFF1003 0.33 -0.2
323,200 + GFF1003 0.33 +0.2
323,200 + GFF1003 0.33 +0.1
323,200 + GFF1003 0.33 +0.4
323,200 + GFF1003 0.33 +0.3
323,200 + GFF1003 0.33 -0.8
323,200 + GFF1003 0.33 -1.3
323,200 + GFF1003 0.33 +0.2
323,200 + GFF1003 0.33 -0.3
323,201 - GFF1003 0.33 -0.7
323,201 - GFF1003 0.33 -0.1
323,201 - GFF1003 0.33 -0.2
323,201 - GFF1003 0.33 -0.2
323,201 - GFF1003 0.33 -1.8
323,201 - GFF1003 0.33 +1.2
323,201 - GFF1003 0.33 -0.0
323,201 - GFF1003 0.33 -1.4
323,201 - GFF1003 0.33 -1.2
323,201 - GFF1003 0.33 -0.2
323,201 - GFF1003 0.33 -3.1
323,425 + GFF1003 0.58 +0.1
323,425 + GFF1003 0.58 -1.6
323,425 + GFF1003 0.58 +0.2
323,425 + GFF1003 0.58 +0.1
323,425 + GFF1003 0.58 +0.6
323,426 - GFF1003 0.58 +0.4
323,426 - GFF1003 0.58 -0.5
323,426 - GFF1003 0.58 -0.1
323,426 - GFF1003 0.58 -0.9
323,452 + GFF1003 0.61 -0.5
323,453 - GFF1003 0.61 -0.6
323,453 - GFF1003 0.61 +0.1
323,453 - GFF1003 0.61 +0.1
323,576 - GFF1003 0.75 -1.4
323,629 + GFF1003 0.81 -0.8
323,630 - GFF1003 0.81 -1.0
323,630 - GFF1003 0.81 -0.1
323,630 - GFF1003 0.81 -0.2
323,671 + GFF1003 0.86 -0.3
323,672 - GFF1003 0.86 -1.1
323,672 - GFF1003 0.86 -1.5
323,672 - GFF1003 0.86 -1.6
323,689 + GFF1003 0.88 -0.1
323,689 + GFF1003 0.88 +0.4
323,689 + GFF1003 0.88 +0.1
323,689 + GFF1003 0.88 +0.5
323,689 + GFF1003 0.88 +0.8
323,690 - GFF1003 0.88 -2.3
323,690 - GFF1003 0.88 -0.9
323,690 - GFF1003 0.88 -0.8
323,690 - GFF1003 0.88 +0.2
323,690 - GFF1003 0.88 -0.7
323,690 - GFF1003 0.88 +0.0
323,690 - GFF1003 0.88 -1.2
323,690 - GFF1003 0.88 -0.7
323,690 - GFF1003 0.88 -0.6
323,690 - GFF1003 0.88 -0.2
323,690 - GFF1003 0.88 +1.0
323,690 - GFF1003 0.88 +0.5
323,690 - GFF1003 0.88 +0.0
323,962 + GFF1004 0.77 -0.5
323,962 + GFF1004 0.77 -0.3
323,962 + GFF1004 0.77 +0.2
323,962 + GFF1004 0.77 -0.8
323,962 + GFF1004 0.77 -0.3
323,962 + GFF1004 0.77 -0.1
323,962 + GFF1004 0.77 -0.3
323,962 + GFF1004 0.77 -0.2
323,962 + GFF1004 0.77 +0.9
323,962 + GFF1004 0.77 +0.3
323,962 + GFF1004 0.77 -0.5
323,962 + GFF1004 0.77 -1.0
323,962 + GFF1004 0.77 +0.8
323,963 - GFF1004 0.78 -0.5
323,963 - GFF1004 0.78 -0.3
323,963 - GFF1004 0.78 -0.5
323,963 - GFF1004 0.78 +0.2
323,963 - GFF1004 0.78 -0.5
323,963 - GFF1004 0.78 -0.6
323,963 - GFF1004 0.78 +0.1
323,963 - GFF1004 0.78 -0.2
323,963 - GFF1004 0.78 -0.3
323,963 - GFF1004 0.78 +0.4
323,963 - GFF1004 0.78 +1.4
323,963 - GFF1004 0.78 -0.5
323,963 - GFF1004 0.78 +0.3
323,963 - GFF1004 0.78 -0.1
323,963 - GFF1004 0.78 +2.0
324,016 + +0.4
324,017 - +0.1
324,017 - -0.1

Or see this region's nucleotide sequence