Strain Fitness in Variovorax sp. SCN45 around GFF890

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF889 and GFF890 are separated by 9 nucleotidesGFF890 and GFF891 are separated by 319 nucleotidesGFF891 and GFF892 are separated by 12 nucleotidesGFF892 and GFF893 overlap by 8 nucleotides GFF889 - FIG00349738: hypothetical protein, at 198,142 to 200,244 GFF889 GFF890 - Two-component system sensor histidine kinase, at 200,254 to 202,221 GFF890 GFF891 - Gfa-like protein, at 202,541 to 202,843 GFF891 GFF892 - FIG016502: iron uptake protein, at 202,856 to 203,179 GFF892 GFF893 - FIG138928: iron-regulated membrane protein, at 203,172 to 204,857 GFF893 Position (kb) 200 201 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 199.357 kb on + strand, within GFF889at 199.357 kb on + strand, within GFF889at 199.358 kb on - strand, within GFF889at 199.358 kb on - strand, within GFF889at 199.358 kb on - strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.538 kb on - strand, within GFF889at 199.538 kb on - strand, within GFF889at 199.540 kb on + strand, within GFF889at 199.540 kb on + strand, within GFF889at 199.541 kb on - strand, within GFF889at 199.606 kb on + strand, within GFF889at 199.606 kb on + strand, within GFF889at 199.780 kb on + strand, within GFF889at 199.781 kb on - strand, within GFF889at 199.781 kb on - strand, within GFF889at 199.828 kb on + strand, within GFF889at 199.876 kb on + strand, within GFF889at 199.876 kb on + strand, within GFF889at 199.877 kb on - strand, within GFF889at 200.041 kb on + strandat 200.042 kb on - strandat 200.042 kb on - strandat 200.042 kb on - strandat 200.113 kb on + strandat 200.114 kb on - strandat 200.131 kb on + strandat 200.131 kb on + strandat 200.903 kb on + strand, within GFF890at 200.904 kb on - strand, within GFF890at 200.904 kb on - strand, within GFF890at 200.904 kb on - strand, within GFF890at 201.041 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.099 kb on - strand, within GFF890at 201.099 kb on - strand, within GFF890at 201.215 kb on - strand, within GFF890at 201.245 kb on + strand, within GFF890at 201.245 kb on + strand, within GFF890at 201.245 kb on + strand, within GFF890at 201.246 kb on - strand, within GFF890at 201.440 kb on + strand, within GFF890at 201.440 kb on + strand, within GFF890at 201.440 kb on + strand, within GFF890at 201.440 kb on + strand, within GFF890at 201.440 kb on + strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.441 kb on - strand, within GFF890at 201.455 kb on + strand, within GFF890at 201.455 kb on + strand, within GFF890at 201.455 kb on + strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.456 kb on - strand, within GFF890at 201.458 kb on + strand, within GFF890at 201.459 kb on - strand, within GFF890at 201.459 kb on - strand, within GFF890at 201.459 kb on - strand, within GFF890at 201.509 kb on + strand, within GFF890at 201.509 kb on + strand, within GFF890at 201.623 kb on + strand, within GFF890at 201.624 kb on - strand, within GFF890at 201.770 kb on + strand, within GFF890at 201.824 kb on + strand, within GFF890at 201.863 kb on + strand, within GFF890at 201.863 kb on + strand, within GFF890at 201.864 kb on - strand, within GFF890at 201.864 kb on - strand, within GFF890at 201.914 kb on + strand, within GFF890at 201.915 kb on - strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.978 kb on - strand, within GFF890at 201.978 kb on - strand, within GFF890at 201.978 kb on - strand, within GFF890at 202.213 kb on + strandat 202.221 kb on + strandat 202.221 kb on + strandat 202.221 kb on + strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.313 kb on - strandat 202.313 kb on - strandat 202.352 kb on + strandat 202.353 kb on - strandat 202.365 kb on + strandat 202.366 kb on - strandat 202.366 kb on - strandat 202.366 kb on - strandat 202.438 kb on + strandat 202.494 kb on - strandat 202.494 kb on - strandat 202.494 kb on - strandat 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.731 kb on + strand, within GFF891

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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199,357 + GFF889 0.58 -1.1
199,357 + GFF889 0.58 +1.3
199,358 - GFF889 0.58 -1.0
199,358 - GFF889 0.58 -0.3
199,358 - GFF889 0.58 +0.9
199,537 + GFF889 0.66 -0.5
199,537 + GFF889 0.66 -0.3
199,537 + GFF889 0.66 -0.4
199,537 + GFF889 0.66 +0.1
199,537 + GFF889 0.66 +0.8
199,537 + GFF889 0.66 -0.1
199,537 + GFF889 0.66 +0.4
199,537 + GFF889 0.66 +0.5
199,538 - GFF889 0.66 +0.3
199,538 - GFF889 0.66 -0.8
199,540 + GFF889 0.66 -0.8
199,540 + GFF889 0.66 -0.2
199,541 - GFF889 0.67 -0.5
199,606 + GFF889 0.70 +0.8
199,606 + GFF889 0.70 -0.4
199,780 + GFF889 0.78 -0.1
199,781 - GFF889 0.78 -1.2
199,781 - GFF889 0.78 -0.3
199,828 + GFF889 0.80 +0.3
199,876 + GFF889 0.82 +0.1
199,876 + GFF889 0.82 +0.1
199,877 - GFF889 0.83 -0.0
200,041 + -0.7
200,042 - +0.3
200,042 - -0.9
200,042 - -0.2
200,113 + +1.8
200,114 - +0.5
200,131 + -0.4
200,131 + -1.1
200,903 + GFF890 0.33 -0.3
200,904 - GFF890 0.33 -0.5
200,904 - GFF890 0.33 +0.3
200,904 - GFF890 0.33 -1.4
201,041 + GFF890 0.40 +2.2
201,053 + GFF890 0.41 -0.4
201,053 + GFF890 0.41 -2.0
201,053 + GFF890 0.41 +0.5
201,053 + GFF890 0.41 +0.2
201,053 + GFF890 0.41 -0.7
201,053 + GFF890 0.41 -0.3
201,054 - GFF890 0.41 -0.1
201,054 - GFF890 0.41 -0.1
201,054 - GFF890 0.41 -1.1
201,054 - GFF890 0.41 -1.0
201,054 - GFF890 0.41 -1.0
201,054 - GFF890 0.41 +0.5
201,054 - GFF890 0.41 -0.6
201,099 - GFF890 0.43 +0.0
201,099 - GFF890 0.43 -0.7
201,215 - GFF890 0.49 -0.7
201,245 + GFF890 0.50 +1.3
201,245 + GFF890 0.50 -0.1
201,245 + GFF890 0.50 +0.3
201,246 - GFF890 0.50 -0.1
201,440 + GFF890 0.60 -0.5
201,440 + GFF890 0.60 -0.7
201,440 + GFF890 0.60 -0.3
201,440 + GFF890 0.60 -1.2
201,440 + GFF890 0.60 -0.9
201,441 - GFF890 0.60 +0.7
201,441 - GFF890 0.60 +0.3
201,441 - GFF890 0.60 -0.8
201,441 - GFF890 0.60 +0.3
201,441 - GFF890 0.60 -0.9
201,441 - GFF890 0.60 -0.4
201,441 - GFF890 0.60 -0.0
201,441 - GFF890 0.60 -1.6
201,441 - GFF890 0.60 +0.0
201,455 + GFF890 0.61 -0.4
201,455 + GFF890 0.61 -0.4
201,455 + GFF890 0.61 +0.9
201,456 - GFF890 0.61 -1.6
201,456 - GFF890 0.61 -0.2
201,456 - GFF890 0.61 -0.2
201,456 - GFF890 0.61 +1.8
201,456 - GFF890 0.61 -0.6
201,456 - GFF890 0.61 +0.3
201,456 - GFF890 0.61 -0.1
201,456 - GFF890 0.61 -0.5
201,456 - GFF890 0.61 -0.3
201,458 + GFF890 0.61 +0.0
201,459 - GFF890 0.61 -1.0
201,459 - GFF890 0.61 -1.3
201,459 - GFF890 0.61 -0.0
201,509 + GFF890 0.64 +0.6
201,509 + GFF890 0.64 -0.3
201,623 + GFF890 0.70 +0.1
201,624 - GFF890 0.70 +0.4
201,770 + GFF890 0.77 -1.1
201,824 + GFF890 0.80 -0.4
201,863 + GFF890 0.82 -0.2
201,863 + GFF890 0.82 -0.2
201,864 - GFF890 0.82 +0.5
201,864 - GFF890 0.82 -0.6
201,914 + GFF890 0.84 +0.1
201,915 - GFF890 0.84 +0.5
201,977 + GFF890 0.88 -0.1
201,977 + GFF890 0.88 +0.4
201,977 + GFF890 0.88 -0.1
201,977 + GFF890 0.88 -0.7
201,978 - GFF890 0.88 -0.4
201,978 - GFF890 0.88 +0.3
201,978 - GFF890 0.88 -0.2
202,213 + +0.0
202,221 + +0.4
202,221 + -0.9
202,221 + +0.6
202,222 - +0.2
202,222 - +0.3
202,222 - -0.8
202,222 - -0.3
202,312 + -0.1
202,312 + -1.1
202,312 + -0.5
202,312 + -0.6
202,312 + +0.1
202,312 + -0.2
202,312 + -0.1
202,313 - -1.5
202,313 - -0.2
202,352 + -1.1
202,353 - -0.0
202,365 + +1.9
202,366 - -0.2
202,366 - +0.1
202,366 - -0.9
202,438 + -0.6
202,494 - +1.5
202,494 - -0.9
202,494 - +0.6
202,577 + GFF891 0.12 +0.1
202,577 + GFF891 0.12 +0.4
202,577 + GFF891 0.12 +0.2
202,577 + GFF891 0.12 -0.9
202,578 - GFF891 0.12 +0.1
202,578 - GFF891 0.12 +0.3
202,578 - GFF891 0.12 -0.1
202,578 - GFF891 0.12 +1.3
202,731 + GFF891 0.63 +1.8

Or see this region's nucleotide sequence