Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7328 and GFF7329 are separated by 10 nucleotides GFF7329 and GFF7330 are separated by 320 nucleotides GFF7330 and GFF7331 are separated by 213 nucleotides GFF7331 and GFF7332 are separated by 211 nucleotides
GFF7328 - no description, at 7 to 228
GFF7328
GFF7329 - Uncharacterized conserved protein YfiP, contains DTW domain, at 239 to 742
GFF7329
GFF7330 - Transcription elongation factor, at 1,063 to 1,545
GFF7330
GFF7331 - FIG00956224: hypothetical protein, at 1,759 to 2,268
GFF7331
GFF7332 - Intracellular protease, at 2,480 to 3,163
GFF7332
Position (kb) 1
2 Strain fitness (log2 ratio) -1
0
1
2
3 at 0.075 kb on + strand, within GFF7328 at 0.075 kb on + strand, within GFF7328 at 0.221 kb on + strand at 0.221 kb on + strand at 0.222 kb on - strand at 0.719 kb on + strand at 0.720 kb on - strand at 0.743 kb on + strand at 0.743 kb on + strand at 0.744 kb on - strand at 0.744 kb on - strand at 0.744 kb on - strand at 0.744 kb on - strand at 0.744 kb on - strand at 0.746 kb on + strand at 0.746 kb on + strand at 0.747 kb on - strand at 0.879 kb on - strand at 0.906 kb on + strand at 1.069 kb on - strand at 1.217 kb on - strand, within GFF7330 at 1.254 kb on - strand, within GFF7330 at 1.298 kb on - strand, within GFF7330 at 1.316 kb on + strand, within GFF7330 at 1.544 kb on - strand at 1.590 kb on - strand at 1.705 kb on + strand at 1.705 kb on + strand at 1.705 kb on + strand at 1.706 kb on - strand at 1.712 kb on + strand at 1.763 kb on + strand at 1.763 kb on + strand at 1.820 kb on + strand, within GFF7331 at 1.820 kb on + strand, within GFF7331 at 1.821 kb on - strand, within GFF7331 at 1.871 kb on + strand, within GFF7331 at 1.871 kb on + strand, within GFF7331 at 2.107 kb on + strand, within GFF7331 at 2.108 kb on - strand, within GFF7331 at 2.252 kb on + strand at 2.252 kb on + strand at 2.253 kb on - strand at 2.253 kb on - strand at 2.253 kb on - strand at 2.253 kb on - strand at 2.284 kb on - strand at 2.343 kb on - strand at 2.343 kb on - strand at 2.403 kb on - strand at 2.429 kb on + strand at 2.429 kb on + strand at 2.429 kb on + strand at 2.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 75 + GFF7328 0.31 -0.6 75 + GFF7328 0.31 +0.1 221 + -0.4 221 + +0.3 222 - -0.7 719 + -0.4 720 - +0.2 743 + -0.5 743 + +0.1 744 - +1.7 744 - -0.7 744 - -0.4 744 - -1.1 744 - +0.2 746 + -1.0 746 + -1.1 747 - -0.4 879 - -0.3 906 + -0.6 1,069 - -0.3 1,217 - GFF7330 0.32 -0.5 1,254 - GFF7330 0.40 -1.4 1,298 - GFF7330 0.49 -0.1 1,316 + GFF7330 0.52 +0.1 1,544 - -0.5 1,590 - -0.3 1,705 + +0.5 1,705 + -0.4 1,705 + -0.5 1,706 - +0.0 1,712 + +0.2 1,763 + +0.5 1,763 + +0.4 1,820 + GFF7331 0.12 +0.1 1,820 + GFF7331 0.12 +0.1 1,821 - GFF7331 0.12 -1.4 1,871 + GFF7331 0.22 +0.6 1,871 + GFF7331 0.22 +0.5 2,107 + GFF7331 0.68 +2.8 2,108 - GFF7331 0.68 -0.5 2,252 + -0.9 2,252 + -1.0 2,253 - -0.6 2,253 - -0.4 2,253 - +0.0 2,253 - -0.7 2,284 - -0.4 2,343 - -0.8 2,343 - -0.5 2,403 - +0.5 2,429 + -0.5 2,429 + -0.2 2,429 + -0.4 2,481 + +3.5
Or see this region's nucleotide sequence