Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF728 and GFF729 are separated by 16 nucleotides GFF729 and GFF730 are separated by 287 nucleotides GFF730 and GFF731 are separated by 185 nucleotides GFF731 and GFF732 are separated by 35 nucleotides
GFF728 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 786,442 to 787,290
GFF728
GFF729 - no description, at 787,307 to 787,546
GFF729
GFF730 - Class A beta-lactamase (EC 3.5.2.6), at 787,834 to 788,724
GFF730
GFF731 - Transcriptional regulator, ArsR family, at 788,910 to 789,251
GFF731
GFF732 - Ligand-binding SRPBCC domain protein family, at 789,287 to 789,829
GFF732
Position (kb) 787
788
789 Strain fitness (log2 ratio) -2
-1
0
1
2 at 787.174 kb on + strand, within GFF728 at 787.590 kb on + strand at 787.590 kb on + strand at 787.591 kb on - strand at 787.591 kb on - strand at 787.591 kb on - strand at 787.768 kb on + strand at 787.818 kb on + strand at 787.922 kb on + strand at 787.923 kb on - strand, within GFF730 at 787.977 kb on + strand, within GFF730 at 787.978 kb on - strand, within GFF730 at 787.989 kb on - strand, within GFF730 at 787.989 kb on - strand, within GFF730 at 787.989 kb on - strand, within GFF730 at 788.418 kb on - strand, within GFF730 at 788.782 kb on - strand at 788.897 kb on + strand at 788.921 kb on - strand at 788.944 kb on + strand at 789.174 kb on + strand, within GFF731 at 789.175 kb on - strand, within GFF731 at 789.175 kb on - strand, within GFF731 at 789.177 kb on + strand, within GFF731 at 789.177 kb on + strand, within GFF731 at 789.178 kb on - strand, within GFF731 at 789.250 kb on - strand at 789.250 kb on - strand at 789.386 kb on + strand, within GFF732
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 787,174 + GFF728 0.86 +1.0 787,590 + -0.6 787,590 + +0.2 787,591 - -1.4 787,591 - +1.2 787,591 - -1.4 787,768 + +0.2 787,818 + -0.2 787,922 + +0.1 787,923 - GFF730 0.10 -0.0 787,977 + GFF730 0.16 +0.4 787,978 - GFF730 0.16 +0.1 787,989 - GFF730 0.17 +0.2 787,989 - GFF730 0.17 -0.8 787,989 - GFF730 0.17 -0.5 788,418 - GFF730 0.66 -0.3 788,782 - +0.5 788,897 + -0.7 788,921 - +0.8 788,944 + -0.3 789,174 + GFF731 0.77 +0.4 789,175 - GFF731 0.77 -1.8 789,175 - GFF731 0.77 -0.3 789,177 + GFF731 0.78 +0.7 789,177 + GFF731 0.78 +1.0 789,178 - GFF731 0.78 -0.8 789,250 - +2.5 789,250 - -0.8 789,386 + GFF732 0.18 -0.0
Or see this region's nucleotide sequence