Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7192 and GFF7193 overlap by 4 nucleotides GFF7193 and GFF7194 overlap by 4 nucleotides GFF7194 and GFF7195 overlap by 4 nucleotides
GFF7192 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 9,693 to 11,291
GFF7192
GFF7193 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 11,288 to 12,325
GFF7193
GFF7194 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 12,322 to 13,164
GFF7194
GFF7195 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 13,161 to 14,174
GFF7195
Position (kb) 11
12
13 Strain fitness (log2 ratio) -1
0
1
2 at 10.368 kb on + strand, within GFF7192 at 10.369 kb on - strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.654 kb on - strand, within GFF7192 at 10.702 kb on - strand, within GFF7192 at 10.833 kb on + strand, within GFF7192 at 10.833 kb on + strand, within GFF7192 at 11.016 kb on + strand, within GFF7192 at 11.131 kb on - strand, within GFF7192 at 11.240 kb on + strand at 11.240 kb on + strand at 11.244 kb on + strand at 11.247 kb on + strand at 11.247 kb on + strand at 11.248 kb on - strand at 11.248 kb on - strand at 11.517 kb on - strand, within GFF7193 at 11.517 kb on - strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 12.122 kb on + strand, within GFF7193 at 12.122 kb on + strand, within GFF7193 at 12.122 kb on + strand, within GFF7193 at 12.123 kb on - strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.446 kb on + strand, within GFF7194 at 12.446 kb on + strand, within GFF7194 at 12.447 kb on - strand, within GFF7194 at 12.769 kb on + strand, within GFF7194 at 12.769 kb on + strand, within GFF7194 at 12.770 kb on - strand, within GFF7194 at 12.770 kb on - strand, within GFF7194 at 12.817 kb on + strand, within GFF7194 at 12.818 kb on - strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 10,368 + GFF7192 0.42 -0.1 10,369 - GFF7192 0.42 -1.1 10,641 + GFF7192 0.59 +0.2 10,641 + GFF7192 0.59 +1.1 10,641 + GFF7192 0.59 +1.0 10,641 + GFF7192 0.59 +0.5 10,654 - GFF7192 0.60 +0.1 10,702 - GFF7192 0.63 +0.3 10,833 + GFF7192 0.71 +1.0 10,833 + GFF7192 0.71 +0.7 11,016 + GFF7192 0.83 +0.2 11,131 - GFF7192 0.90 -0.4 11,240 + +0.5 11,240 + -0.8 11,244 + +0.7 11,247 + +0.0 11,247 + +2.1 11,248 - -0.6 11,248 - -0.1 11,517 - GFF7193 0.22 +0.3 11,517 - GFF7193 0.22 -0.3 11,771 + GFF7193 0.47 +0.5 11,771 + GFF7193 0.47 +1.4 11,771 + GFF7193 0.47 +1.1 11,771 + GFF7193 0.47 -0.4 11,772 - GFF7193 0.47 -0.2 11,772 - GFF7193 0.47 +0.7 11,772 - GFF7193 0.47 -0.6 11,772 - GFF7193 0.47 +0.0 11,772 - GFF7193 0.47 -0.3 11,781 - GFF7193 0.47 +0.9 11,781 - GFF7193 0.47 -0.9 11,781 - GFF7193 0.47 +0.4 11,781 - GFF7193 0.47 +0.1 12,122 + GFF7193 0.80 -0.3 12,122 + GFF7193 0.80 -0.4 12,122 + GFF7193 0.80 -1.3 12,123 - GFF7193 0.80 +0.1 12,182 + GFF7193 0.86 -0.6 12,182 + GFF7193 0.86 +0.4 12,182 + GFF7193 0.86 -0.0 12,182 + GFF7193 0.86 -0.1 12,183 - GFF7193 0.86 +0.1 12,183 - GFF7193 0.86 +1.1 12,183 - GFF7193 0.86 +0.0 12,446 + GFF7194 0.15 +0.3 12,446 + GFF7194 0.15 +1.7 12,447 - GFF7194 0.15 -0.3 12,769 + GFF7194 0.53 +0.5 12,769 + GFF7194 0.53 -0.4 12,770 - GFF7194 0.53 +1.3 12,770 - GFF7194 0.53 +0.2 12,817 + GFF7194 0.59 +0.3 12,818 - GFF7194 0.59 +1.1 13,024 + GFF7194 0.83 +0.3 13,024 + GFF7194 0.83 +0.1 13,024 + GFF7194 0.83 -0.1 13,025 - GFF7194 0.83 +0.0 13,025 - GFF7194 0.83 -0.1 13,025 - GFF7194 0.83 -0.5 13,025 - GFF7194 0.83 +0.0
Or see this region's nucleotide sequence