Strain Fitness in Variovorax sp. SCN45 around GFF7052

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7051 and GFF7052 are separated by 40 nucleotidesGFF7052 and GFF7053 are separated by 134 nucleotides GFF7051 - hypothetical protein, at 11,023 to 12,126 GFF7051 GFF7052 - Uncharacterized MFS-type transporter, at 12,167 to 13,489 GFF7052 GFF7053 - Transcriptional regulator, LysR family, at 13,624 to 14,526 GFF7053 Position (kb) 12 13 14Strain fitness (log2 ratio) -2 -1 0 1at 11.279 kb on + strand, within GFF7051at 11.280 kb on - strand, within GFF7051at 11.406 kb on - strand, within GFF7051at 11.406 kb on - strand, within GFF7051at 11.406 kb on - strand, within GFF7051at 11.483 kb on + strand, within GFF7051at 11.483 kb on + strand, within GFF7051at 11.483 kb on + strand, within GFF7051at 11.540 kb on + strand, within GFF7051at 11.540 kb on + strand, within GFF7051at 11.540 kb on + strand, within GFF7051at 11.541 kb on - strand, within GFF7051at 11.541 kb on - strand, within GFF7051at 11.564 kb on + strand, within GFF7051at 11.564 kb on + strand, within GFF7051at 11.564 kb on + strand, within GFF7051at 11.564 kb on + strand, within GFF7051at 11.565 kb on - strand, within GFF7051at 11.565 kb on - strand, within GFF7051at 11.565 kb on - strand, within GFF7051at 11.565 kb on - strand, within GFF7051at 11.565 kb on - strand, within GFF7051at 11.565 kb on - strand, within GFF7051at 11.565 kb on - strand, within GFF7051at 11.618 kb on + strand, within GFF7051at 11.618 kb on + strand, within GFF7051at 11.618 kb on + strand, within GFF7051at 11.618 kb on + strand, within GFF7051at 11.618 kb on + strand, within GFF7051at 11.619 kb on - strand, within GFF7051at 11.694 kb on - strand, within GFF7051at 11.694 kb on - strand, within GFF7051at 11.694 kb on - strand, within GFF7051at 12.080 kb on + strandat 12.080 kb on + strandat 12.080 kb on + strandat 12.080 kb on + strandat 12.080 kb on + strandat 12.081 kb on - strandat 12.081 kb on - strandat 12.081 kb on - strandat 12.081 kb on - strandat 12.081 kb on - strandat 12.270 kb on + strandat 12.270 kb on + strandat 12.271 kb on - strandat 12.363 kb on + strand, within GFF7052at 12.364 kb on - strand, within GFF7052at 12.364 kb on - strand, within GFF7052at 12.364 kb on - strand, within GFF7052at 12.364 kb on - strand, within GFF7052at 12.364 kb on - strand, within GFF7052at 12.364 kb on - strand, within GFF7052at 12.526 kb on - strand, within GFF7052at 12.690 kb on + strand, within GFF7052at 12.691 kb on - strand, within GFF7052at 12.691 kb on - strand, within GFF7052at 12.691 kb on - strand, within GFF7052at 12.691 kb on - strand, within GFF7052at 12.691 kb on - strand, within GFF7052at 12.702 kb on + strand, within GFF7052at 12.702 kb on + strand, within GFF7052at 12.702 kb on + strand, within GFF7052at 12.702 kb on + strand, within GFF7052at 12.703 kb on - strand, within GFF7052at 12.703 kb on - strand, within GFF7052at 12.703 kb on - strand, within GFF7052at 12.703 kb on - strand, within GFF7052at 12.703 kb on - strand, within GFF7052at 12.717 kb on + strand, within GFF7052at 12.717 kb on + strand, within GFF7052at 12.718 kb on - strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.867 kb on + strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 12.868 kb on - strand, within GFF7052at 13.026 kb on + strand, within GFF7052at 13.026 kb on + strand, within GFF7052at 13.026 kb on + strand, within GFF7052at 13.027 kb on - strand, within GFF7052at 13.027 kb on - strand, within GFF7052at 13.027 kb on - strand, within GFF7052at 13.027 kb on - strand, within GFF7052at 13.027 kb on - strand, within GFF7052at 13.158 kb on + strand, within GFF7052at 13.158 kb on + strand, within GFF7052at 13.158 kb on + strand, within GFF7052at 13.158 kb on + strand, within GFF7052at 13.159 kb on - strand, within GFF7052at 13.159 kb on - strand, within GFF7052at 13.159 kb on - strand, within GFF7052at 13.383 kb on + strandat 13.383 kb on + strandat 13.383 kb on + strandat 13.383 kb on + strandat 13.384 kb on - strandat 13.538 kb on + strandat 13.539 kb on - strandat 13.539 kb on - strandat 13.539 kb on - strandat 13.562 kb on + strandat 13.562 kb on + strandat 13.562 kb on + strandat 13.562 kb on + strandat 13.562 kb on + strandat 13.563 kb on - strandat 13.563 kb on - strandat 13.563 kb on - strandat 13.563 kb on - strandat 13.563 kb on - strandat 13.563 kb on - strandat 13.563 kb on - strandat 13.563 kb on - strandat 13.593 kb on - strandat 13.603 kb on + strandat 13.724 kb on - strand, within GFF7053at 14.041 kb on + strand, within GFF7053at 14.330 kb on - strand, within GFF7053at 14.330 kb on - strand, within GFF7053

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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11,279 + GFF7051 0.23 +0.1
11,280 - GFF7051 0.23 -0.1
11,406 - GFF7051 0.35 +0.2
11,406 - GFF7051 0.35 -0.1
11,406 - GFF7051 0.35 +0.2
11,483 + GFF7051 0.42 -0.5
11,483 + GFF7051 0.42 +0.6
11,483 + GFF7051 0.42 -0.2
11,540 + GFF7051 0.47 +0.7
11,540 + GFF7051 0.47 -0.9
11,540 + GFF7051 0.47 +0.6
11,541 - GFF7051 0.47 +0.7
11,541 - GFF7051 0.47 -1.5
11,564 + GFF7051 0.49 -0.1
11,564 + GFF7051 0.49 -1.0
11,564 + GFF7051 0.49 +0.1
11,564 + GFF7051 0.49 -1.5
11,565 - GFF7051 0.49 -0.2
11,565 - GFF7051 0.49 +0.8
11,565 - GFF7051 0.49 -0.3
11,565 - GFF7051 0.49 -1.0
11,565 - GFF7051 0.49 +0.3
11,565 - GFF7051 0.49 -0.6
11,565 - GFF7051 0.49 +0.5
11,618 + GFF7051 0.54 -0.6
11,618 + GFF7051 0.54 +1.3
11,618 + GFF7051 0.54 -0.3
11,618 + GFF7051 0.54 -0.7
11,618 + GFF7051 0.54 -0.6
11,619 - GFF7051 0.54 -0.7
11,694 - GFF7051 0.61 -0.2
11,694 - GFF7051 0.61 -0.7
11,694 - GFF7051 0.61 -0.3
12,080 + -0.3
12,080 + -0.7
12,080 + -1.2
12,080 + +0.4
12,080 + -0.4
12,081 - -0.3
12,081 - +0.1
12,081 - -0.3
12,081 - +1.0
12,081 - -0.7
12,270 + +0.7
12,270 + +0.7
12,271 - +0.1
12,363 + GFF7052 0.15 -0.3
12,364 - GFF7052 0.15 +0.1
12,364 - GFF7052 0.15 +0.1
12,364 - GFF7052 0.15 +0.7
12,364 - GFF7052 0.15 -1.3
12,364 - GFF7052 0.15 -0.3
12,364 - GFF7052 0.15 +0.7
12,526 - GFF7052 0.27 -1.0
12,690 + GFF7052 0.40 -0.1
12,691 - GFF7052 0.40 +0.3
12,691 - GFF7052 0.40 +0.1
12,691 - GFF7052 0.40 +0.4
12,691 - GFF7052 0.40 -1.0
12,691 - GFF7052 0.40 -0.5
12,702 + GFF7052 0.40 +0.2
12,702 + GFF7052 0.40 +1.3
12,702 + GFF7052 0.40 +0.3
12,702 + GFF7052 0.40 +0.6
12,703 - GFF7052 0.41 -0.4
12,703 - GFF7052 0.41 -0.8
12,703 - GFF7052 0.41 +0.7
12,703 - GFF7052 0.41 +0.1
12,703 - GFF7052 0.41 -0.4
12,717 + GFF7052 0.42 -0.3
12,717 + GFF7052 0.42 -0.8
12,718 - GFF7052 0.42 +1.3
12,867 + GFF7052 0.53 -0.7
12,867 + GFF7052 0.53 -0.7
12,867 + GFF7052 0.53 -0.2
12,867 + GFF7052 0.53 -1.3
12,867 + GFF7052 0.53 -2.5
12,867 + GFF7052 0.53 +1.3
12,867 + GFF7052 0.53 -0.3
12,867 + GFF7052 0.53 -0.3
12,867 + GFF7052 0.53 -0.4
12,867 + GFF7052 0.53 +0.3
12,867 + GFF7052 0.53 +0.3
12,867 + GFF7052 0.53 -0.7
12,867 + GFF7052 0.53 +0.3
12,867 + GFF7052 0.53 +0.2
12,867 + GFF7052 0.53 -0.0
12,867 + GFF7052 0.53 -1.4
12,868 - GFF7052 0.53 -0.3
12,868 - GFF7052 0.53 -0.8
12,868 - GFF7052 0.53 -0.4
12,868 - GFF7052 0.53 -0.3
12,868 - GFF7052 0.53 -0.8
12,868 - GFF7052 0.53 -0.6
12,868 - GFF7052 0.53 -0.3
12,868 - GFF7052 0.53 -0.4
12,868 - GFF7052 0.53 -1.9
12,868 - GFF7052 0.53 +0.0
12,868 - GFF7052 0.53 -0.8
12,868 - GFF7052 0.53 -1.3
12,868 - GFF7052 0.53 -0.8
13,026 + GFF7052 0.65 -1.4
13,026 + GFF7052 0.65 -1.0
13,026 + GFF7052 0.65 +0.2
13,027 - GFF7052 0.65 -0.0
13,027 - GFF7052 0.65 +0.1
13,027 - GFF7052 0.65 -1.2
13,027 - GFF7052 0.65 -1.1
13,027 - GFF7052 0.65 -0.4
13,158 + GFF7052 0.75 -0.4
13,158 + GFF7052 0.75 +0.3
13,158 + GFF7052 0.75 -0.4
13,158 + GFF7052 0.75 +1.3
13,159 - GFF7052 0.75 -0.7
13,159 - GFF7052 0.75 +1.7
13,159 - GFF7052 0.75 -0.1
13,383 + -0.4
13,383 + -2.6
13,383 + -0.7
13,383 + -0.0
13,384 - -0.6
13,538 + -0.8
13,539 - -0.7
13,539 - +0.6
13,539 - +1.3
13,562 + -0.0
13,562 + -0.3
13,562 + +0.6
13,562 + +0.5
13,562 + -0.9
13,563 - +0.1
13,563 - +0.3
13,563 - -0.1
13,563 - +0.3
13,563 - -0.5
13,563 - -1.0
13,563 - -0.4
13,563 - +0.3
13,593 - -0.0
13,603 + -0.9
13,724 - GFF7053 0.11 -0.9
14,041 + GFF7053 0.46 -0.6
14,330 - GFF7053 0.78 +0.4
14,330 - GFF7053 0.78 +0.2

Or see this region's nucleotide sequence