Strain Fitness in Variovorax sp. SCN45 around GFF6855

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6853 and GFF6854 are separated by 22 nucleotidesGFF6854 and GFF6855 are separated by 12 nucleotidesGFF6855 and GFF6856 are separated by 241 nucleotidesGFF6856 and GFF6857 are separated by 105 nucleotides GFF6853 - Putative transmembrane sensor, at 48,651 to 49,604 GFF6853 GFF6854 - RNA polymerase ECF-type sigma factor, at 49,627 to 50,187 GFF6854 GFF6855 - hypothetical protein, at 50,200 to 50,880 GFF6855 GFF6856 - DipZ protein, at 51,122 to 51,772 GFF6856 GFF6857 - hypothetical protein, at 51,878 to 52,006 GFF6857 Position (kb) 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 49.337 kb on - strand, within GFF6853at 49.644 kb on + strandat 49.645 kb on - strandat 49.645 kb on - strandat 49.645 kb on - strandat 49.645 kb on - strandat 49.922 kb on + strand, within GFF6854at 49.923 kb on - strand, within GFF6854at 50.009 kb on + strand, within GFF6854at 50.010 kb on - strand, within GFF6854at 50.010 kb on - strand, within GFF6854at 50.063 kb on + strand, within GFF6854at 50.063 kb on + strand, within GFF6854at 50.063 kb on + strand, within GFF6854at 50.064 kb on - strand, within GFF6854at 50.064 kb on - strand, within GFF6854at 50.138 kb on + strandat 50.627 kb on + strand, within GFF6855at 50.627 kb on + strand, within GFF6855at 50.628 kb on - strand, within GFF6855at 50.628 kb on - strand, within GFF6855at 50.628 kb on - strand, within GFF6855at 50.684 kb on + strand, within GFF6855at 50.684 kb on + strand, within GFF6855at 50.685 kb on - strand, within GFF6855at 50.925 kb on + strandat 50.926 kb on - strandat 50.926 kb on - strandat 51.044 kb on + strandat 51.045 kb on - strandat 51.045 kb on - strandat 51.045 kb on - strandat 51.045 kb on - strandat 51.081 kb on + strandat 51.081 kb on + strandat 51.081 kb on + strandat 51.081 kb on + strandat 51.106 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.241 kb on - strand, within GFF6856at 51.241 kb on - strand, within GFF6856at 51.241 kb on - strand, within GFF6856at 51.425 kb on + strand, within GFF6856at 51.425 kb on + strand, within GFF6856at 51.425 kb on + strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.459 kb on - strand, within GFF6856at 51.459 kb on - strand, within GFF6856at 51.482 kb on + strand, within GFF6856at 51.483 kb on - strand, within GFF6856at 51.483 kb on - strand, within GFF6856at 51.483 kb on - strand, within GFF6856at 51.611 kb on + strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.642 kb on - strand, within GFF6856at 51.656 kb on + strand, within GFF6856at 51.657 kb on - strand, within GFF6856at 51.686 kb on + strand, within GFF6856at 51.687 kb on - strand, within GFF6856at 51.710 kb on + strandat 51.710 kb on + strandat 51.710 kb on + strandat 51.710 kb on + strandat 51.710 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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49,337 - GFF6853 0.72 -1.7
49,644 + +0.2
49,645 - +0.3
49,645 - +0.5
49,645 - +0.9
49,645 - +0.2
49,922 + GFF6854 0.53 +0.0
49,923 - GFF6854 0.53 -1.4
50,009 + GFF6854 0.68 +0.0
50,010 - GFF6854 0.68 -2.4
50,010 - GFF6854 0.68 -0.6
50,063 + GFF6854 0.78 -0.4
50,063 + GFF6854 0.78 -0.8
50,063 + GFF6854 0.78 +0.3
50,064 - GFF6854 0.78 -0.6
50,064 - GFF6854 0.78 +0.1
50,138 + -0.6
50,627 + GFF6855 0.63 -2.1
50,627 + GFF6855 0.63 -0.6
50,628 - GFF6855 0.63 -0.5
50,628 - GFF6855 0.63 -0.5
50,628 - GFF6855 0.63 -0.1
50,684 + GFF6855 0.71 -0.2
50,684 + GFF6855 0.71 +0.2
50,685 - GFF6855 0.71 -0.2
50,925 + -0.4
50,926 - -0.4
50,926 - +0.6
51,044 + +0.0
51,045 - -0.3
51,045 - -0.8
51,045 - +0.5
51,045 - -0.2
51,081 + -0.4
51,081 + +0.7
51,081 + +1.7
51,081 + -0.8
51,106 + -1.3
51,116 + -0.5
51,116 + -0.0
51,116 + +0.2
51,116 + +1.2
51,116 + -0.3
51,117 - -0.4
51,117 - +0.5
51,117 - +0.3
51,241 - GFF6856 0.18 +0.1
51,241 - GFF6856 0.18 +0.1
51,241 - GFF6856 0.18 +0.0
51,425 + GFF6856 0.47 +0.0
51,425 + GFF6856 0.47 -0.2
51,425 + GFF6856 0.47 -1.8
51,426 - GFF6856 0.47 -0.6
51,426 - GFF6856 0.47 -0.5
51,426 - GFF6856 0.47 +1.8
51,426 - GFF6856 0.47 +1.8
51,426 - GFF6856 0.47 -0.4
51,426 - GFF6856 0.47 +1.2
51,459 - GFF6856 0.52 -0.1
51,459 - GFF6856 0.52 -0.1
51,482 + GFF6856 0.55 +0.3
51,483 - GFF6856 0.55 -0.6
51,483 - GFF6856 0.55 -1.0
51,483 - GFF6856 0.55 -0.1
51,611 + GFF6856 0.75 +0.8
51,612 - GFF6856 0.75 +1.1
51,612 - GFF6856 0.75 -0.4
51,612 - GFF6856 0.75 -0.5
51,612 - GFF6856 0.75 +0.5
51,642 - GFF6856 0.80 -1.1
51,656 + GFF6856 0.82 -1.4
51,657 - GFF6856 0.82 -0.2
51,686 + GFF6856 0.87 +0.5
51,687 - GFF6856 0.87 -0.1
51,710 + -0.5
51,710 + -1.3
51,710 + -0.3
51,710 + -1.0
51,710 + -0.0

Or see this region's nucleotide sequence