Strain Fitness in Variovorax sp. SCN45 around GFF6849

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6847 and GFF6848 are separated by 10 nucleotidesGFF6848 and GFF6849 are separated by 12 nucleotidesGFF6849 and GFF6850 are separated by 70 nucleotides GFF6847 - Ferric siderophore transport system, periplasmic binding protein TonB, at 29,862 to 30,599 GFF6847 GFF6848 - Biopolymer transport protein ExbD/TolR, at 30,610 to 31,023 GFF6848 GFF6849 - MotA/TolQ/ExbB proton channel family protein, at 31,036 to 32,844 GFF6849 GFF6850 - Hemolysin activation/secretion protein associated with VreARI signalling system, at 32,915 to 34,564 GFF6850 Position (kb) 31 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 30.118 kb on + strand, within GFF6847at 30.118 kb on + strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.128 kb on - strand, within GFF6847at 30.465 kb on + strand, within GFF6847at 30.465 kb on + strand, within GFF6847at 30.466 kb on - strand, within GFF6847at 30.466 kb on - strand, within GFF6847at 30.692 kb on + strand, within GFF6848at 30.693 kb on - strand, within GFF6848at 31.169 kb on + strandat 31.170 kb on - strandat 31.212 kb on + strandat 31.328 kb on + strand, within GFF6849at 31.328 kb on + strand, within GFF6849at 31.328 kb on + strand, within GFF6849at 31.328 kb on + strand, within GFF6849at 31.328 kb on + strand, within GFF6849at 31.328 kb on + strand, within GFF6849at 31.329 kb on - strand, within GFF6849at 31.329 kb on - strand, within GFF6849at 31.449 kb on - strand, within GFF6849at 31.460 kb on + strand, within GFF6849at 31.460 kb on + strand, within GFF6849at 31.460 kb on + strand, within GFF6849at 31.505 kb on + strand, within GFF6849at 31.505 kb on + strand, within GFF6849at 31.505 kb on + strand, within GFF6849at 31.506 kb on - strand, within GFF6849at 31.640 kb on + strand, within GFF6849at 31.857 kb on + strand, within GFF6849at 31.857 kb on + strand, within GFF6849at 31.858 kb on - strand, within GFF6849at 31.858 kb on - strand, within GFF6849at 31.992 kb on + strand, within GFF6849at 31.993 kb on - strand, within GFF6849at 31.993 kb on - strand, within GFF6849at 32.027 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.369 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.415 kb on - strand, within GFF6849at 32.415 kb on - strand, within GFF6849at 32.415 kb on - strand, within GFF6849at 32.427 kb on - strand, within GFF6849at 32.483 kb on + strand, within GFF6849at 32.484 kb on - strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.833 kb on + strandat 32.833 kb on + strandat 32.833 kb on + strandat 32.833 kb on + strandat 32.919 kb on + strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 33.015 kb on + strandat 33.015 kb on + strandat 33.015 kb on + strandat 33.015 kb on + strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.126 kb on + strand, within GFF6850at 33.126 kb on + strand, within GFF6850at 33.126 kb on + strand, within GFF6850at 33.126 kb on + strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.231 kb on + strand, within GFF6850at 33.232 kb on - strand, within GFF6850at 33.345 kb on + strand, within GFF6850at 33.345 kb on + strand, within GFF6850at 33.345 kb on + strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.396 kb on + strand, within GFF6850at 33.396 kb on + strand, within GFF6850at 33.396 kb on + strand, within GFF6850at 33.397 kb on - strand, within GFF6850at 33.405 kb on + strand, within GFF6850at 33.405 kb on + strand, within GFF6850at 33.406 kb on - strand, within GFF6850at 33.433 kb on - strand, within GFF6850at 33.433 kb on - strand, within GFF6850at 33.481 kb on - strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.535 kb on - strand, within GFF6850at 33.535 kb on - strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.729 kb on + strand, within GFF6850at 33.729 kb on + strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.777 kb on + strand, within GFF6850

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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30,118 + GFF6847 0.35 +2.6
30,118 + GFF6847 0.35 -0.4
30,119 - GFF6847 0.35 +0.6
30,119 - GFF6847 0.35 -0.2
30,119 - GFF6847 0.35 -0.4
30,119 - GFF6847 0.35 -0.6
30,119 - GFF6847 0.35 -0.9
30,119 - GFF6847 0.35 -0.1
30,128 - GFF6847 0.36 +0.3
30,465 + GFF6847 0.82 -0.0
30,465 + GFF6847 0.82 +0.3
30,466 - GFF6847 0.82 -0.4
30,466 - GFF6847 0.82 +0.0
30,692 + GFF6848 0.20 -0.5
30,693 - GFF6848 0.20 +0.2
31,169 + +0.4
31,170 - -0.2
31,212 + -1.0
31,328 + GFF6849 0.16 -0.5
31,328 + GFF6849 0.16 -0.3
31,328 + GFF6849 0.16 -0.5
31,328 + GFF6849 0.16 -0.8
31,328 + GFF6849 0.16 +0.3
31,328 + GFF6849 0.16 +0.4
31,329 - GFF6849 0.16 +0.0
31,329 - GFF6849 0.16 -1.3
31,449 - GFF6849 0.23 +0.1
31,460 + GFF6849 0.23 +0.2
31,460 + GFF6849 0.23 -0.8
31,460 + GFF6849 0.23 +0.1
31,505 + GFF6849 0.26 -0.7
31,505 + GFF6849 0.26 -0.7
31,505 + GFF6849 0.26 -0.8
31,506 - GFF6849 0.26 +1.1
31,640 + GFF6849 0.33 +2.2
31,857 + GFF6849 0.45 -0.6
31,857 + GFF6849 0.45 -0.1
31,858 - GFF6849 0.45 -0.1
31,858 - GFF6849 0.45 +0.4
31,992 + GFF6849 0.53 +1.5
31,993 - GFF6849 0.53 -0.3
31,993 - GFF6849 0.53 -0.5
32,027 + GFF6849 0.55 -0.1
32,186 + GFF6849 0.64 -0.6
32,186 + GFF6849 0.64 -0.7
32,186 + GFF6849 0.64 +0.5
32,186 + GFF6849 0.64 -0.9
32,186 + GFF6849 0.64 +0.1
32,186 + GFF6849 0.64 -0.2
32,186 + GFF6849 0.64 +0.6
32,186 + GFF6849 0.64 -2.2
32,187 - GFF6849 0.64 +0.0
32,187 - GFF6849 0.64 -0.0
32,187 - GFF6849 0.64 -0.6
32,187 - GFF6849 0.64 -0.8
32,187 - GFF6849 0.64 -0.7
32,187 - GFF6849 0.64 +0.4
32,187 - GFF6849 0.64 -0.6
32,187 - GFF6849 0.64 +0.5
32,187 - GFF6849 0.64 +0.2
32,187 - GFF6849 0.64 -0.3
32,369 + GFF6849 0.74 -0.3
32,414 + GFF6849 0.76 -1.4
32,414 + GFF6849 0.76 -1.9
32,414 + GFF6849 0.76 -1.0
32,414 + GFF6849 0.76 +0.3
32,415 - GFF6849 0.76 -0.5
32,415 - GFF6849 0.76 +0.0
32,415 - GFF6849 0.76 +1.6
32,427 - GFF6849 0.77 -0.6
32,483 + GFF6849 0.80 -0.7
32,484 - GFF6849 0.80 -1.2
32,486 + GFF6849 0.80 -0.7
32,486 + GFF6849 0.80 +0.4
32,486 + GFF6849 0.80 +0.2
32,486 + GFF6849 0.80 -0.1
32,486 + GFF6849 0.80 +0.1
32,487 - GFF6849 0.80 -0.1
32,487 - GFF6849 0.80 -0.7
32,487 - GFF6849 0.80 -1.0
32,487 - GFF6849 0.80 -0.4
32,487 - GFF6849 0.80 -0.4
32,487 - GFF6849 0.80 -0.1
32,487 - GFF6849 0.80 -0.8
32,833 + +0.1
32,833 + -0.3
32,833 + +0.4
32,833 + -0.4
32,919 + -0.3
32,920 - -0.5
32,920 - -1.2
32,920 - +0.1
32,920 - -1.6
32,920 - -2.8
32,920 - -0.8
33,015 + -0.3
33,015 + +0.6
33,015 + -0.4
33,015 + -1.9
33,016 - -0.3
33,016 - +0.2
33,016 - +0.3
33,016 - -0.8
33,016 - -0.4
33,126 + GFF6850 0.13 +0.3
33,126 + GFF6850 0.13 -0.8
33,126 + GFF6850 0.13 -0.4
33,126 + GFF6850 0.13 -0.2
33,127 - GFF6850 0.13 -1.1
33,127 - GFF6850 0.13 +1.2
33,127 - GFF6850 0.13 -0.3
33,127 - GFF6850 0.13 +1.5
33,127 - GFF6850 0.13 -0.4
33,127 - GFF6850 0.13 +0.6
33,231 + GFF6850 0.19 +0.4
33,232 - GFF6850 0.19 +0.4
33,345 + GFF6850 0.26 +1.0
33,345 + GFF6850 0.26 -1.2
33,345 + GFF6850 0.26 -0.2
33,346 - GFF6850 0.26 +0.0
33,346 - GFF6850 0.26 -0.4
33,346 - GFF6850 0.26 -0.5
33,346 - GFF6850 0.26 +0.2
33,346 - GFF6850 0.26 -0.3
33,396 + GFF6850 0.29 -0.4
33,396 + GFF6850 0.29 +0.3
33,396 + GFF6850 0.29 +0.1
33,397 - GFF6850 0.29 +0.3
33,405 + GFF6850 0.30 -0.8
33,405 + GFF6850 0.30 -0.2
33,406 - GFF6850 0.30 +0.2
33,433 - GFF6850 0.31 -0.4
33,433 - GFF6850 0.31 -0.2
33,481 - GFF6850 0.34 -0.6
33,534 + GFF6850 0.38 +0.0
33,534 + GFF6850 0.38 +1.0
33,534 + GFF6850 0.38 -0.1
33,534 + GFF6850 0.38 -1.1
33,534 + GFF6850 0.38 -0.7
33,535 - GFF6850 0.38 +0.2
33,535 - GFF6850 0.38 -0.5
33,648 + GFF6850 0.44 -1.4
33,648 + GFF6850 0.44 -0.9
33,648 + GFF6850 0.44 -1.1
33,648 + GFF6850 0.44 +0.2
33,649 - GFF6850 0.44 -0.1
33,649 - GFF6850 0.44 +0.3
33,649 - GFF6850 0.44 -0.7
33,649 - GFF6850 0.44 -0.4
33,729 + GFF6850 0.49 -0.1
33,729 + GFF6850 0.49 -0.4
33,730 - GFF6850 0.49 +0.1
33,730 - GFF6850 0.49 -0.4
33,730 - GFF6850 0.49 -0.9
33,730 - GFF6850 0.49 -0.9
33,730 - GFF6850 0.49 -1.6
33,777 + GFF6850 0.52 -0.6
33,777 + GFF6850 0.52 +0.6
33,777 + GFF6850 0.52 -2.1

Or see this region's nucleotide sequence