Strain Fitness in Variovorax sp. SCN45 around GFF6488

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6486 and GFF6487 are separated by 264 nucleotidesGFF6487 and GFF6488 are separated by 76 nucleotidesGFF6488 and GFF6489 are separated by 497 nucleotidesGFF6489 and GFF6490 overlap by 4 nucleotides GFF6486 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 64,740 to 66,041 GFF6486 GFF6487 - Gfa-like protein, at 66,306 to 66,719 GFF6487 GFF6488 - no description, at 66,796 to 66,915 GFF6488 GFF6489 - no description, at 67,413 to 67,856 GFF6489 GFF6490 - Uncharacterized conserved protein YfiP, contains DTW domain, at 67,853 to 68,545 GFF6490 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1at 66.117 kb on + strandat 66.118 kb on - strandat 66.118 kb on - strandat 66.153 kb on + strandat 66.153 kb on + strandat 66.154 kb on - strandat 66.199 kb on + strandat 66.199 kb on + strandat 66.240 kb on - strandat 66.240 kb on - strandat 66.240 kb on - strandat 66.279 kb on + strandat 66.280 kb on - strandat 66.318 kb on + strandat 66.318 kb on + strandat 66.318 kb on + strandat 66.319 kb on - strandat 66.320 kb on + strandat 66.435 kb on + strand, within GFF6487at 66.436 kb on - strand, within GFF6487at 66.436 kb on - strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.555 kb on + strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.556 kb on - strand, within GFF6487at 66.624 kb on + strand, within GFF6487at 66.624 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.645 kb on + strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.646 kb on - strand, within GFF6487at 66.812 kb on + strand, within GFF6488at 66.812 kb on + strand, within GFF6488at 66.812 kb on + strand, within GFF6488at 66.813 kb on - strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.856 kb on + strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.857 kb on - strand, within GFF6488at 66.870 kb on - strand, within GFF6488at 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.915 kb on + strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.916 kb on - strandat 66.973 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.113 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.114 kb on - strandat 67.128 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.203 kb on + strandat 67.203 kb on + strandat 67.203 kb on + strandat 67.204 kb on - strandat 67.204 kb on - strandat 67.447 kb on + strandat 67.448 kb on - strandat 67.448 kb on - strandat 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.471 kb on + strand, within GFF6489at 67.472 kb on - strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.531 kb on + strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.532 kb on - strand, within GFF6489at 67.741 kb on + strand, within GFF6489at 67.742 kb on - strand, within GFF6489at 67.742 kb on - strand, within GFF6489at 67.764 kb on - strand, within GFF6489

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
66,117 + -1.4
66,118 - +0.6
66,118 - +0.4
66,153 + -0.7
66,153 + -0.2
66,154 - -0.2
66,199 + +0.1
66,199 + -0.7
66,240 - +0.4
66,240 - -0.1
66,240 - -0.5
66,279 + +0.2
66,280 - -0.8
66,318 + -0.5
66,318 + -0.5
66,318 + -0.9
66,319 - -0.1
66,320 + -0.5
66,435 + GFF6487 0.31 -0.6
66,436 - GFF6487 0.31 -0.9
66,436 - GFF6487 0.31 +0.5
66,555 + GFF6487 0.60 +0.1
66,555 + GFF6487 0.60 -0.1
66,555 + GFF6487 0.60 +0.2
66,555 + GFF6487 0.60 +0.4
66,556 - GFF6487 0.60 -0.1
66,556 - GFF6487 0.60 -0.3
66,556 - GFF6487 0.60 +0.4
66,556 - GFF6487 0.60 +0.8
66,556 - GFF6487 0.60 +0.9
66,556 - GFF6487 0.60 -0.6
66,556 - GFF6487 0.60 +0.4
66,556 - GFF6487 0.60 -0.8
66,556 - GFF6487 0.60 -0.3
66,556 - GFF6487 0.60 -0.8
66,556 - GFF6487 0.60 -0.2
66,556 - GFF6487 0.60 +1.4
66,624 + GFF6487 0.77 +0.3
66,624 + GFF6487 0.77 -0.5
66,645 + GFF6487 0.82 +0.0
66,645 + GFF6487 0.82 -0.3
66,645 + GFF6487 0.82 -1.0
66,645 + GFF6487 0.82 +0.6
66,645 + GFF6487 0.82 -0.6
66,646 - GFF6487 0.82 +0.1
66,646 - GFF6487 0.82 -0.6
66,646 - GFF6487 0.82 -0.2
66,646 - GFF6487 0.82 -0.7
66,646 - GFF6487 0.82 +0.6
66,646 - GFF6487 0.82 -0.5
66,812 + GFF6488 0.13 -0.2
66,812 + GFF6488 0.13 +0.7
66,812 + GFF6488 0.13 -1.0
66,813 - GFF6488 0.14 -0.8
66,856 + GFF6488 0.50 -0.4
66,856 + GFF6488 0.50 +0.1
66,856 + GFF6488 0.50 -1.0
66,857 - GFF6488 0.51 -0.5
66,857 - GFF6488 0.51 -0.6
66,870 - GFF6488 0.62 -0.4
66,915 + -0.1
66,915 + -1.3
66,915 + -0.6
66,915 + -0.4
66,916 - +0.5
66,916 - -0.4
66,916 - +0.1
66,916 - -0.7
66,973 + -0.2
67,113 + -1.6
67,113 + -0.7
67,113 + -0.4
67,113 + +0.3
67,113 + -0.1
67,113 + +0.6
67,113 + -0.0
67,113 - -0.3
67,114 - -0.6
67,114 - -0.0
67,114 - -0.8
67,114 - +0.5
67,114 - -1.0
67,128 + -0.7
67,155 + -0.0
67,155 + +0.4
67,155 + +0.2
67,155 + -0.3
67,155 + -0.7
67,156 - +0.3
67,156 - -0.2
67,156 - +0.2
67,156 - +0.1
67,156 - +0.1
67,156 - -0.3
67,203 + -0.1
67,203 + -0.6
67,203 + +0.9
67,204 - -0.1
67,204 - -0.2
67,447 + -0.2
67,448 - +0.2
67,448 - -0.6
67,471 + GFF6489 0.13 -0.2
67,471 + GFF6489 0.13 -0.9
67,471 + GFF6489 0.13 -0.3
67,471 + GFF6489 0.13 -0.1
67,471 + GFF6489 0.13 +0.4
67,472 - GFF6489 0.13 -0.8
67,531 + GFF6489 0.27 +0.1
67,531 + GFF6489 0.27 +0.7
67,531 + GFF6489 0.27 -0.5
67,531 + GFF6489 0.27 -1.0
67,531 + GFF6489 0.27 +0.2
67,531 + GFF6489 0.27 -0.1
67,531 + GFF6489 0.27 +0.7
67,531 + GFF6489 0.27 -0.1
67,532 - GFF6489 0.27 -0.4
67,532 - GFF6489 0.27 -0.4
67,532 - GFF6489 0.27 -0.0
67,532 - GFF6489 0.27 +0.5
67,532 - GFF6489 0.27 -0.5
67,532 - GFF6489 0.27 -0.3
67,532 - GFF6489 0.27 +1.1
67,532 - GFF6489 0.27 +0.1
67,532 - GFF6489 0.27 -1.8
67,532 - GFF6489 0.27 +1.7
67,741 + GFF6489 0.74 -0.6
67,742 - GFF6489 0.74 -0.4
67,742 - GFF6489 0.74 +0.6
67,764 - GFF6489 0.79 -0.4

Or see this region's nucleotide sequence