Strain Fitness in Variovorax sp. SCN45 around GFF6478

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6476 and GFF6477 are separated by 63 nucleotidesGFF6477 and GFF6478 are separated by 54 nucleotidesGFF6478 and GFF6479 are separated by 703 nucleotides GFF6476 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 52,089 to 53,261 GFF6476 GFF6477 - Glycine cleavage system H protein, at 53,325 to 53,696 GFF6477 GFF6478 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 53,751 to 56,660 GFF6478 GFF6479 - hypothetical protein, at 57,364 to 58,947 GFF6479 Position (kb) 53 54 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 52.818 kb on + strand, within GFF6476at 52.818 kb on + strand, within GFF6476at 52.819 kb on - strand, within GFF6476at 53.142 kb on + strand, within GFF6476at 53.142 kb on + strand, within GFF6476at 53.143 kb on - strand, within GFF6476at 53.143 kb on - strand, within GFF6476at 53.143 kb on - strand, within GFF6476at 53.247 kb on + strandat 53.248 kb on - strandat 53.250 kb on + strandat 53.250 kb on + strandat 53.250 kb on + strandat 53.251 kb on - strandat 53.293 kb on + strandat 53.293 kb on + strandat 53.294 kb on - strandat 53.337 kb on + strandat 53.337 kb on + strandat 53.337 kb on + strandat 53.337 kb on + strandat 53.337 kb on + strandat 53.337 kb on + strandat 53.337 kb on + strandat 53.338 kb on - strandat 53.338 kb on - strandat 53.338 kb on - strandat 53.338 kb on - strandat 53.671 kb on - strandat 53.785 kb on + strandat 53.786 kb on - strandat 53.786 kb on - strandat 53.786 kb on - strandat 53.786 kb on - strandat 53.804 kb on - strandat 54.027 kb on + strandat 54.027 kb on + strandat 54.027 kb on + strandat 54.027 kb on + strandat 54.027 kb on + strandat 54.028 kb on - strandat 54.031 kb on - strandat 54.031 kb on - strandat 54.031 kb on - strandat 54.087 kb on + strand, within GFF6478at 54.088 kb on - strand, within GFF6478at 54.088 kb on - strand, within GFF6478at 54.088 kb on - strand, within GFF6478at 54.088 kb on - strand, within GFF6478at 54.096 kb on + strand, within GFF6478at 54.097 kb on - strand, within GFF6478at 54.097 kb on - strand, within GFF6478at 54.105 kb on + strand, within GFF6478at 54.426 kb on + strand, within GFF6478at 54.627 kb on + strand, within GFF6478at 54.627 kb on + strand, within GFF6478at 54.627 kb on + strand, within GFF6478at 54.627 kb on + strand, within GFF6478at 54.813 kb on + strand, within GFF6478at 54.813 kb on + strand, within GFF6478at 54.813 kb on + strand, within GFF6478at 54.813 kb on + strand, within GFF6478at 54.813 kb on + strand, within GFF6478at 54.813 kb on + strand, within GFF6478at 54.813 kb on + strand, within GFF6478at 54.814 kb on - strand, within GFF6478at 54.814 kb on - strand, within GFF6478at 54.814 kb on - strand, within GFF6478at 54.814 kb on - strand, within GFF6478at 54.814 kb on - strand, within GFF6478at 54.814 kb on - strand, within GFF6478at 54.822 kb on + strand, within GFF6478at 54.823 kb on - strand, within GFF6478at 54.823 kb on - strand, within GFF6478at 55.240 kb on - strand, within GFF6478at 55.240 kb on - strand, within GFF6478at 55.401 kb on + strand, within GFF6478at 55.402 kb on - strand, within GFF6478at 55.402 kb on - strand, within GFF6478at 55.452 kb on + strand, within GFF6478at 55.497 kb on + strand, within GFF6478at 55.497 kb on + strand, within GFF6478at 55.497 kb on + strand, within GFF6478at 55.498 kb on - strand, within GFF6478at 55.725 kb on + strand, within GFF6478at 55.726 kb on - strand, within GFF6478at 55.726 kb on - strand, within GFF6478at 55.803 kb on + strand, within GFF6478at 55.803 kb on + strand, within GFF6478at 55.803 kb on + strand, within GFF6478at 55.803 kb on + strand, within GFF6478at 55.803 kb on + strand, within GFF6478at 55.803 kb on + strand, within GFF6478at 55.804 kb on - strand, within GFF6478at 55.804 kb on - strand, within GFF6478at 55.804 kb on - strand, within GFF6478at 55.804 kb on - strand, within GFF6478at 55.804 kb on - strand, within GFF6478at 55.804 kb on - strand, within GFF6478at 55.966 kb on - strand, within GFF6478at 56.067 kb on + strand, within GFF6478at 56.067 kb on + strand, within GFF6478at 56.067 kb on + strand, within GFF6478at 56.067 kb on + strand, within GFF6478at 56.067 kb on + strand, within GFF6478at 56.068 kb on - strand, within GFF6478at 56.068 kb on - strand, within GFF6478at 56.068 kb on - strand, within GFF6478at 56.068 kb on - strand, within GFF6478at 56.068 kb on - strand, within GFF6478at 56.068 kb on - strand, within GFF6478at 56.068 kb on - strand, within GFF6478at 56.133 kb on + strand, within GFF6478at 56.133 kb on + strand, within GFF6478at 56.133 kb on + strand, within GFF6478at 56.133 kb on + strand, within GFF6478at 56.133 kb on + strand, within GFF6478at 56.133 kb on + strand, within GFF6478at 56.134 kb on - strand, within GFF6478at 56.134 kb on - strand, within GFF6478at 56.134 kb on - strand, within GFF6478at 56.134 kb on - strand, within GFF6478at 56.134 kb on - strand, within GFF6478at 56.160 kb on + strand, within GFF6478at 56.173 kb on - strand, within GFF6478at 56.173 kb on - strand, within GFF6478at 56.173 kb on - strand, within GFF6478at 56.280 kb on + strand, within GFF6478at 56.559 kb on + strandat 56.559 kb on + strandat 56.559 kb on + strandat 56.560 kb on - strandat 56.592 kb on + strandat 56.637 kb on + strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.638 kb on - strandat 56.747 kb on + strandat 56.748 kb on - strandat 57.248 kb on + strandat 57.248 kb on + strandat 57.248 kb on + strandat 57.249 kb on - strandat 57.249 kb on - strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.419 kb on + strandat 57.419 kb on + strandat 57.420 kb on - strandat 57.420 kb on - strandat 57.427 kb on - strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.476 kb on + strandat 57.477 kb on - strandat 57.477 kb on - strandat 57.477 kb on - strandat 57.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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52,818 + GFF6476 0.62 +0.5
52,818 + GFF6476 0.62 -0.2
52,819 - GFF6476 0.62 -0.9
53,142 + GFF6476 0.90 +1.0
53,142 + GFF6476 0.90 +1.0
53,143 - GFF6476 0.90 -1.3
53,143 - GFF6476 0.90 +0.1
53,143 - GFF6476 0.90 +0.4
53,247 + +1.6
53,248 - -0.6
53,250 + -1.7
53,250 + -0.2
53,250 + -0.6
53,251 - +0.4
53,293 + +0.2
53,293 + +1.1
53,294 - -0.9
53,337 + -0.2
53,337 + +1.0
53,337 + -1.2
53,337 + -0.4
53,337 + -0.8
53,337 + -1.6
53,337 + -0.9
53,338 - +0.1
53,338 - -2.0
53,338 - +0.4
53,338 - -0.6
53,671 - -0.2
53,785 + -0.1
53,786 - +0.1
53,786 - -0.3
53,786 - +0.1
53,786 - +0.5
53,804 - +1.1
54,027 + +0.3
54,027 + +0.6
54,027 + -0.4
54,027 + +1.4
54,027 + -0.2
54,028 - +0.3
54,031 - +1.4
54,031 - +0.8
54,031 - -0.4
54,087 + GFF6478 0.12 -0.7
54,088 - GFF6478 0.12 +0.5
54,088 - GFF6478 0.12 -0.0
54,088 - GFF6478 0.12 -0.4
54,088 - GFF6478 0.12 -1.0
54,096 + GFF6478 0.12 -0.1
54,097 - GFF6478 0.12 -0.4
54,097 - GFF6478 0.12 -0.0
54,105 + GFF6478 0.12 -0.7
54,426 + GFF6478 0.23 -1.3
54,627 + GFF6478 0.30 +1.1
54,627 + GFF6478 0.30 -0.8
54,627 + GFF6478 0.30 -1.6
54,627 + GFF6478 0.30 -1.2
54,813 + GFF6478 0.36 -0.3
54,813 + GFF6478 0.36 +2.0
54,813 + GFF6478 0.36 -0.9
54,813 + GFF6478 0.36 -1.2
54,813 + GFF6478 0.36 -0.5
54,813 + GFF6478 0.36 +0.8
54,813 + GFF6478 0.36 +0.6
54,814 - GFF6478 0.37 -1.6
54,814 - GFF6478 0.37 +0.7
54,814 - GFF6478 0.37 -1.2
54,814 - GFF6478 0.37 -0.4
54,814 - GFF6478 0.37 -0.2
54,814 - GFF6478 0.37 +2.4
54,822 + GFF6478 0.37 -0.2
54,823 - GFF6478 0.37 -0.1
54,823 - GFF6478 0.37 -1.9
55,240 - GFF6478 0.51 -0.1
55,240 - GFF6478 0.51 -0.7
55,401 + GFF6478 0.57 +0.0
55,402 - GFF6478 0.57 -0.9
55,402 - GFF6478 0.57 -0.4
55,452 + GFF6478 0.58 -0.4
55,497 + GFF6478 0.60 +0.6
55,497 + GFF6478 0.60 +0.8
55,497 + GFF6478 0.60 -1.6
55,498 - GFF6478 0.60 -0.3
55,725 + GFF6478 0.68 +0.2
55,726 - GFF6478 0.68 -0.2
55,726 - GFF6478 0.68 +0.1
55,803 + GFF6478 0.71 -0.3
55,803 + GFF6478 0.71 -2.4
55,803 + GFF6478 0.71 -0.2
55,803 + GFF6478 0.71 -0.9
55,803 + GFF6478 0.71 -0.8
55,803 + GFF6478 0.71 -0.5
55,804 - GFF6478 0.71 -0.3
55,804 - GFF6478 0.71 -1.0
55,804 - GFF6478 0.71 +2.0
55,804 - GFF6478 0.71 -1.0
55,804 - GFF6478 0.71 -0.3
55,804 - GFF6478 0.71 -2.3
55,966 - GFF6478 0.76 -0.5
56,067 + GFF6478 0.80 -0.2
56,067 + GFF6478 0.80 -0.4
56,067 + GFF6478 0.80 -0.3
56,067 + GFF6478 0.80 +0.3
56,067 + GFF6478 0.80 -0.2
56,068 - GFF6478 0.80 +0.3
56,068 - GFF6478 0.80 -0.0
56,068 - GFF6478 0.80 -0.8
56,068 - GFF6478 0.80 -0.1
56,068 - GFF6478 0.80 +0.1
56,068 - GFF6478 0.80 +0.2
56,068 - GFF6478 0.80 -0.4
56,133 + GFF6478 0.82 -0.2
56,133 + GFF6478 0.82 +0.2
56,133 + GFF6478 0.82 +0.1
56,133 + GFF6478 0.82 -1.9
56,133 + GFF6478 0.82 -0.3
56,133 + GFF6478 0.82 +0.8
56,134 - GFF6478 0.82 -0.5
56,134 - GFF6478 0.82 +0.2
56,134 - GFF6478 0.82 -0.8
56,134 - GFF6478 0.82 -1.4
56,134 - GFF6478 0.82 -0.0
56,160 + GFF6478 0.83 -0.5
56,173 - GFF6478 0.83 -0.2
56,173 - GFF6478 0.83 -0.0
56,173 - GFF6478 0.83 -0.1
56,280 + GFF6478 0.87 -2.2
56,559 + +0.8
56,559 + +0.9
56,559 + -0.2
56,560 - -0.0
56,592 + +0.6
56,637 + +0.1
56,638 - +0.2
56,638 - +0.2
56,638 - -0.8
56,638 - +1.1
56,638 - -0.2
56,747 + +1.4
56,748 - +0.3
57,248 + -0.3
57,248 + +0.6
57,248 + -0.9
57,249 - +0.4
57,249 - -0.1
57,323 + +0.7
57,323 + +0.2
57,419 + +0.4
57,419 + -0.2
57,420 - -0.1
57,420 - -0.7
57,427 - -0.3
57,476 + +0.4
57,476 + -0.1
57,476 + -0.3
57,476 + -0.3
57,476 + -0.1
57,476 + -0.3
57,477 - -0.1
57,477 - +0.3
57,477 - -0.1
57,477 - -0.2

Or see this region's nucleotide sequence