Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF621 and GFF622 overlap by 4 nucleotides GFF622 and GFF623 overlap by 4 nucleotides GFF623 and GFF624 are separated by 76 nucleotides GFF624 and GFF625 are separated by 175 nucleotides
GFF621 - Aspartate aminotransferase (EC 2.6.1.1), at 668,367 to 669,545
GFF621
GFF622 - BUG/TctC family periplasmic protein, at 669,542 to 670,528
GFF622
GFF623 - Demethylmenaquinone methyltransferase-like protein, at 670,525 to 671,253
GFF623
GFF624 - hypothetical protein, at 671,330 to 671,680
GFF624
GFF625 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 671,856 to 673,421
GFF625
Position (kb) 670
671
672 Strain fitness (log2 ratio) -1
0
1 at 669.932 kb on + strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.989 kb on + strand, within GFF622 at 669.990 kb on - strand, within GFF622 at 670.106 kb on + strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 671.090 kb on + strand, within GFF623 at 671.091 kb on - strand, within GFF623 at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.332 kb on - strand at 671.332 kb on - strand at 671.332 kb on - strand at 671.374 kb on - strand, within GFF624 at 671.520 kb on + strand, within GFF624 at 671.607 kb on + strand, within GFF624 at 672.019 kb on + strand, within GFF625 at 672.019 kb on + strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.020 kb on - strand, within GFF625
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 669,932 + GFF622 0.40 -0.1 669,933 - GFF622 0.40 +0.7 669,933 - GFF622 0.40 -0.3 669,933 - GFF622 0.40 -0.7 669,933 - GFF622 0.40 +0.0 669,989 + GFF622 0.45 -0.1 669,990 - GFF622 0.45 +0.0 670,106 + GFF622 0.57 -0.5 670,107 - GFF622 0.57 +0.3 670,107 - GFF622 0.57 +0.1 670,107 - GFF622 0.57 +0.4 670,107 - GFF622 0.57 -0.2 670,107 - GFF622 0.57 +0.4 671,090 + GFF623 0.78 -0.3 671,091 - GFF623 0.78 -1.4 671,331 + -0.4 671,331 + +1.1 671,331 + -0.2 671,331 + +0.5 671,331 + -0.1 671,331 + -0.0 671,332 - +0.9 671,332 - +0.2 671,332 - +0.0 671,374 - GFF624 0.13 -0.4 671,520 + GFF624 0.54 +0.1 671,607 + GFF624 0.79 +0.2 672,019 + GFF625 0.10 +0.2 672,019 + GFF625 0.10 +0.8 672,020 - GFF625 0.10 -0.4 672,020 - GFF625 0.10 -0.3 672,020 - GFF625 0.10 +0.5
Or see this region's nucleotide sequence