Strain Fitness in Variovorax sp. SCN45 around GFF609

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF608 and GFF609 overlap by 1 nucleotidesGFF609 and GFF610 are separated by 24 nucleotides GFF608 - VgrG protein, at 653,675 to 656,194 GFF608 GFF609 - hypothetical protein, at 656,194 to 658,056 GFF609 GFF610 - hypothetical protein, at 658,081 to 659,037 GFF610 Position (kb) 656 657 658 659Strain fitness (log2 ratio) -2 -1 0 1at 655.706 kb on + strand, within GFF608at 655.706 kb on + strand, within GFF608at 655.707 kb on - strand, within GFF608at 655.865 kb on + strand, within GFF608at 655.865 kb on + strand, within GFF608at 655.865 kb on + strand, within GFF608at 655.866 kb on - strand, within GFF608at 656.163 kb on - strandat 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.525 kb on - strand, within GFF609at 656.525 kb on - strand, within GFF609at 656.768 kb on - strand, within GFF609at 656.834 kb on - strand, within GFF609at 656.834 kb on - strand, within GFF609at 656.834 kb on - strand, within GFF609at 656.990 kb on - strand, within GFF609at 657.061 kb on + strand, within GFF609at 657.062 kb on - strand, within GFF609at 657.062 kb on - strand, within GFF609at 657.151 kb on + strand, within GFF609at 657.152 kb on - strand, within GFF609at 657.224 kb on - strand, within GFF609at 657.224 kb on - strand, within GFF609at 657.391 kb on + strand, within GFF609at 657.392 kb on - strand, within GFF609at 657.475 kb on + strand, within GFF609at 657.475 kb on + strand, within GFF609at 657.475 kb on + strand, within GFF609at 657.476 kb on - strand, within GFF609at 657.477 kb on + strand, within GFF609at 657.477 kb on + strand, within GFF609at 657.663 kb on + strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.667 kb on + strand, within GFF609at 657.668 kb on - strand, within GFF609at 657.676 kb on + strand, within GFF609at 657.676 kb on + strand, within GFF609at 657.682 kb on - strand, within GFF609at 657.840 kb on - strand, within GFF609at 657.854 kb on + strand, within GFF609at 657.854 kb on + strand, within GFF609at 657.855 kb on - strand, within GFF609at 657.855 kb on - strand, within GFF609at 657.864 kb on + strand, within GFF609at 657.864 kb on + strand, within GFF609at 657.864 kb on + strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.946 kb on + strandat 658.226 kb on + strand, within GFF610at 658.227 kb on - strand, within GFF610at 658.283 kb on - strand, within GFF610at 658.283 kb on - strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.320 kb on - strand, within GFF610at 658.320 kb on - strand, within GFF610at 658.375 kb on + strand, within GFF610at 658.376 kb on - strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.379 kb on - strand, within GFF610at 658.404 kb on - strand, within GFF610at 658.429 kb on + strand, within GFF610at 658.430 kb on - strand, within GFF610at 658.430 kb on - strand, within GFF610at 658.617 kb on - strand, within GFF610at 658.617 kb on - strand, within GFF610at 658.720 kb on + strand, within GFF610at 658.720 kb on + strand, within GFF610at 658.872 kb on - strand, within GFF610at 658.872 kb on - strand, within GFF610

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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655,706 + GFF608 0.81 -0.4
655,706 + GFF608 0.81 -0.3
655,707 - GFF608 0.81 +0.3
655,865 + GFF608 0.87 +0.3
655,865 + GFF608 0.87 -0.4
655,865 + GFF608 0.87 -0.1
655,866 - GFF608 0.87 -1.0
656,163 - -0.3
656,524 + GFF609 0.18 -0.8
656,524 + GFF609 0.18 -1.1
656,524 + GFF609 0.18 +1.2
656,524 + GFF609 0.18 -0.7
656,524 + GFF609 0.18 -1.1
656,525 - GFF609 0.18 +0.7
656,525 - GFF609 0.18 +1.5
656,768 - GFF609 0.31 -0.3
656,834 - GFF609 0.34 -0.6
656,834 - GFF609 0.34 -0.9
656,834 - GFF609 0.34 -1.1
656,990 - GFF609 0.43 -0.3
657,061 + GFF609 0.47 -0.5
657,062 - GFF609 0.47 -0.3
657,062 - GFF609 0.47 -0.3
657,151 + GFF609 0.51 -0.6
657,152 - GFF609 0.51 +0.1
657,224 - GFF609 0.55 -0.3
657,224 - GFF609 0.55 -1.1
657,391 + GFF609 0.64 -0.2
657,392 - GFF609 0.64 -0.3
657,475 + GFF609 0.69 -0.0
657,475 + GFF609 0.69 +0.1
657,475 + GFF609 0.69 +0.2
657,476 - GFF609 0.69 -0.6
657,477 + GFF609 0.69 -0.7
657,477 + GFF609 0.69 -0.5
657,663 + GFF609 0.79 -0.8
657,664 - GFF609 0.79 -0.1
657,664 - GFF609 0.79 -0.1
657,664 - GFF609 0.79 +0.6
657,664 - GFF609 0.79 +0.9
657,667 + GFF609 0.79 -0.3
657,668 - GFF609 0.79 -2.5
657,676 + GFF609 0.80 +0.7
657,676 + GFF609 0.80 +0.8
657,682 - GFF609 0.80 -0.8
657,840 - GFF609 0.88 +0.9
657,854 + GFF609 0.89 -0.1
657,854 + GFF609 0.89 +0.1
657,855 - GFF609 0.89 -0.0
657,855 - GFF609 0.89 -0.2
657,864 + GFF609 0.90 -2.1
657,864 + GFF609 0.90 -0.1
657,864 + GFF609 0.90 +0.4
657,865 - GFF609 0.90 -1.6
657,865 - GFF609 0.90 -0.0
657,865 - GFF609 0.90 +0.8
657,865 - GFF609 0.90 +0.6
657,865 - GFF609 0.90 -1.7
657,865 - GFF609 0.90 -0.7
657,865 - GFF609 0.90 -0.3
657,946 + -0.4
658,226 + GFF610 0.15 -0.1
658,227 - GFF610 0.15 -1.6
658,283 - GFF610 0.21 +0.3
658,283 - GFF610 0.21 -0.5
658,319 + GFF610 0.25 +0.1
658,319 + GFF610 0.25 -0.8
658,319 + GFF610 0.25 +0.4
658,319 + GFF610 0.25 +0.8
658,319 + GFF610 0.25 -0.6
658,319 + GFF610 0.25 -1.0
658,320 - GFF610 0.25 -0.6
658,320 - GFF610 0.25 +0.2
658,375 + GFF610 0.31 +0.6
658,376 - GFF610 0.31 +0.2
658,378 + GFF610 0.31 +0.2
658,378 + GFF610 0.31 -0.2
658,378 + GFF610 0.31 -0.2
658,379 - GFF610 0.31 +0.5
658,404 - GFF610 0.34 +0.1
658,429 + GFF610 0.36 -0.1
658,430 - GFF610 0.36 +0.8
658,430 - GFF610 0.36 +1.2
658,617 - GFF610 0.56 +0.4
658,617 - GFF610 0.56 -0.2
658,720 + GFF610 0.67 +0.2
658,720 + GFF610 0.67 -0.1
658,872 - GFF610 0.83 +1.2
658,872 - GFF610 0.83 -0.2

Or see this region's nucleotide sequence